miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2913 3' -52.1 NC_001493.1 + 21391 0.66 0.975912
Target:  5'- cACcAGGGGCGGCGgccUGAaggucgggccuUGUGCACUAa -3'
miRNA:   3'- aUGuUUCUUGCCGC---GCU-----------ACACGUGGU- -5'
2913 3' -52.1 NC_001493.1 + 108133 0.66 0.973186
Target:  5'- uUACGAAGAcuaacccgACGGCGUGAg--GCcCCGc -3'
miRNA:   3'- -AUGUUUCU--------UGCCGCGCUacaCGuGGU- -5'
2913 3' -52.1 NC_001493.1 + 98858 0.66 0.970243
Target:  5'- gGCcauAAGAACGGuCGUGuagaaGUGCAUCAa -3'
miRNA:   3'- aUGu--UUCUUGCC-GCGCua---CACGUGGU- -5'
2913 3' -52.1 NC_001493.1 + 28796 0.66 0.970243
Target:  5'- cACGAAGAAaucaugcgaGGCGCaGAUccGUGCGCUc -3'
miRNA:   3'- aUGUUUCUUg--------CCGCG-CUA--CACGUGGu -5'
2913 3' -52.1 NC_001493.1 + 51823 0.66 0.970243
Target:  5'- --aAAGGAGC-GCGCGAcccuUG-GCACCAa -3'
miRNA:   3'- augUUUCUUGcCGCGCU----ACaCGUGGU- -5'
2913 3' -52.1 NC_001493.1 + 25077 0.66 0.967076
Target:  5'- aACAGGGAACGGCGCucucAUGgaGUuCCAa -3'
miRNA:   3'- aUGUUUCUUGCCGCGc---UACa-CGuGGU- -5'
2913 3' -52.1 NC_001493.1 + 31354 0.66 0.960042
Target:  5'- --gAGAGGugGGCGCGGgcgGUugCAg -3'
miRNA:   3'- augUUUCUugCCGCGCUacaCGugGU- -5'
2913 3' -52.1 NC_001493.1 + 111142 0.67 0.947655
Target:  5'- cACGGGGuGACGGCGUc--GUGCAUCAc -3'
miRNA:   3'- aUGUUUC-UUGCCGCGcuaCACGUGGU- -5'
2913 3' -52.1 NC_001493.1 + 106167 0.68 0.915909
Target:  5'- gAgAAGGAACGGUGgGGgcagGUGC-CCAu -3'
miRNA:   3'- aUgUUUCUUGCCGCgCUa---CACGuGGU- -5'
2913 3' -52.1 NC_001493.1 + 75166 0.69 0.903231
Target:  5'- gGCcAAGAGCacgauGGCGaaGAUGUGUACCAu -3'
miRNA:   3'- aUGuUUCUUG-----CCGCg-CUACACGUGGU- -5'
2913 3' -52.1 NC_001493.1 + 119340 0.69 0.896504
Target:  5'- gGCGAGGcGCGGCgguuucgagGUGAUGUGCGgguCCAu -3'
miRNA:   3'- aUGUUUCuUGCCG---------CGCUACACGU---GGU- -5'
2913 3' -52.1 NC_001493.1 + 3786 0.69 0.896504
Target:  5'- gGCGAGGcGCGGCgguuucgagGUGAUGUGCGgguCCAu -3'
miRNA:   3'- aUGUUUCuUGCCG---------CGCUACACGU---GGU- -5'
2913 3' -52.1 NC_001493.1 + 26128 0.7 0.850988
Target:  5'- gACGAAGAaucacugggACGGCGCGGUGccGagaACCAc -3'
miRNA:   3'- aUGUUUCU---------UGCCGCGCUACa-Cg--UGGU- -5'
2913 3' -52.1 NC_001493.1 + 14622 0.7 0.842598
Target:  5'- gGCGAguGGAugGGCGCGG-GUGcCACUu -3'
miRNA:   3'- aUGUU--UCUugCCGCGCUaCAC-GUGGu -5'
2913 3' -52.1 NC_001493.1 + 130177 0.7 0.842598
Target:  5'- gGCGAguGGAugGGCGCGG-GUGcCACUu -3'
miRNA:   3'- aUGUU--UCUugCCGCGCUaCAC-GUGGu -5'
2913 3' -52.1 NC_001493.1 + 14910 0.7 0.842598
Target:  5'- cGgAGGGAGCGGUGCGG-GUGCggGCCc -3'
miRNA:   3'- aUgUUUCUUGCCGCGCUaCACG--UGGu -5'
2913 3' -52.1 NC_001493.1 + 130464 0.7 0.842598
Target:  5'- cGgAGGGAGCGGUGCGG-GUGCggGCCc -3'
miRNA:   3'- aUgUUUCUUGCCGCGCUaCACG--UGGu -5'
2913 3' -52.1 NC_001493.1 + 47239 0.76 0.547455
Target:  5'- cGCGu-GAGCGGCGgGGUG-GCACCGg -3'
miRNA:   3'- aUGUuuCUUGCCGCgCUACaCGUGGU- -5'
2913 3' -52.1 NC_001493.1 + 41663 1.07 0.006774
Target:  5'- cUACAAAGAACGGCGCGAUGUGCACCAu -3'
miRNA:   3'- -AUGUUUCUUGCCGCGCUACACGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.