miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29130 3' -55 NC_006146.1 + 151471 1.09 0.004459
Target:  5'- gCGCCGCGUCCACGUUGGCUUCGAAGAu -3'
miRNA:   3'- -GCGGCGCAGGUGCAACCGAAGCUUCU- -5'
29130 3' -55 NC_006146.1 + 101857 0.72 0.721725
Target:  5'- uGCCGCa-CCACGggUGGCggggCGAGGAc -3'
miRNA:   3'- gCGGCGcaGGUGCa-ACCGaa--GCUUCU- -5'
29130 3' -55 NC_006146.1 + 51901 0.71 0.750811
Target:  5'- gGCUGCGUCgGCGggGGCcucCGAGGc -3'
miRNA:   3'- gCGGCGCAGgUGCaaCCGaa-GCUUCu -5'
29130 3' -55 NC_006146.1 + 53805 0.7 0.788112
Target:  5'- gCGCgGCGUCCauaGCGgggGGCUg-GAAGAg -3'
miRNA:   3'- -GCGgCGCAGG---UGCaa-CCGAagCUUCU- -5'
29130 3' -55 NC_006146.1 + 54414 0.7 0.805969
Target:  5'- gCGCCGCuccUCCGCGguggagagGGUcUCGGAGAu -3'
miRNA:   3'- -GCGGCGc--AGGUGCaa------CCGaAGCUUCU- -5'
29130 3' -55 NC_006146.1 + 56222 0.7 0.820663
Target:  5'- aGCCGCGagccguccagcgggUCCGCGggGGCggaggCGggGc -3'
miRNA:   3'- gCGGCGC--------------AGGUGCaaCCGaa---GCuuCu -5'
29130 3' -55 NC_006146.1 + 113052 0.7 0.831573
Target:  5'- gGCCucgGgGUCCACGUUGGCcUUGAc-- -3'
miRNA:   3'- gCGG---CgCAGGUGCAACCGaAGCUucu -5'
29130 3' -55 NC_006146.1 + 94636 0.69 0.839761
Target:  5'- gGCCGgGUCCAUGaUGGCcgcccUGggGAc -3'
miRNA:   3'- gCGGCgCAGGUGCaACCGaa---GCuuCU- -5'
29130 3' -55 NC_006146.1 + 109484 0.69 0.839761
Target:  5'- gGCCGUGcCCGCGUUGGCcacCGcAGc -3'
miRNA:   3'- gCGGCGCaGGUGCAACCGaa-GCuUCu -5'
29130 3' -55 NC_006146.1 + 94792 0.69 0.847763
Target:  5'- gGCCaCGUCCACGUaGGCcaggccCGggGGu -3'
miRNA:   3'- gCGGcGCAGGUGCAaCCGaa----GCuuCU- -5'
29130 3' -55 NC_006146.1 + 117882 0.69 0.847763
Target:  5'- gGCCGCGgccagCCGCGUgaggcccagGGCca-GAAGAg -3'
miRNA:   3'- gCGGCGCa----GGUGCAa--------CCGaagCUUCU- -5'
29130 3' -55 NC_006146.1 + 121479 0.68 0.877786
Target:  5'- aCGCCGgGUCCAuCGUgggGGCcgCcAAGAa -3'
miRNA:   3'- -GCGGCgCAGGU-GCAa--CCGaaGcUUCU- -5'
29130 3' -55 NC_006146.1 + 51174 0.68 0.891526
Target:  5'- gGCUGUGgagCCGgGgaGGCUgcUCGAGGAa -3'
miRNA:   3'- gCGGCGCa--GGUgCaaCCGA--AGCUUCU- -5'
29130 3' -55 NC_006146.1 + 2372 0.68 0.897418
Target:  5'- aGCCgggacagGCGUCCGCG--GGCUUCcaGAGGGc -3'
miRNA:   3'- gCGG-------CGCAGGUGCaaCCGAAG--CUUCU- -5'
29130 3' -55 NC_006146.1 + 71632 0.68 0.898062
Target:  5'- aGCCaCGUCUGCGUgcgggaaGGCggCGAGGGa -3'
miRNA:   3'- gCGGcGCAGGUGCAa------CCGaaGCUUCU- -5'
29130 3' -55 NC_006146.1 + 113753 0.68 0.910449
Target:  5'- gGCC-CGUCC-CGUccggGGCUcggggUCGGAGAc -3'
miRNA:   3'- gCGGcGCAGGuGCAa---CCGA-----AGCUUCU- -5'
29130 3' -55 NC_006146.1 + 52351 0.68 0.910449
Target:  5'- gGCgGCGUCCuu-UUGGCagugggggUCGAAGAg -3'
miRNA:   3'- gCGgCGCAGGugcAACCGa-------AGCUUCU- -5'
29130 3' -55 NC_006146.1 + 41570 0.67 0.916295
Target:  5'- gGCCGC-UCCGCGc--GCUgcgCGAGGAc -3'
miRNA:   3'- gCGGCGcAGGUGCaacCGAa--GCUUCU- -5'
29130 3' -55 NC_006146.1 + 162935 0.67 0.916295
Target:  5'- -uCUGCGUCUcaggugcugggACGUUGGCaUCGGAGu -3'
miRNA:   3'- gcGGCGCAGG-----------UGCAACCGaAGCUUCu -5'
29130 3' -55 NC_006146.1 + 42793 0.67 0.921907
Target:  5'- gGCCGCcucggCCAgGUUGGCggucUCGcAGAg -3'
miRNA:   3'- gCGGCGca---GGUgCAACCGa---AGCuUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.