Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29130 | 5' | -58.5 | NC_006146.1 | + | 155200 | 0.7 | 0.597723 |
Target: 5'- -cUCCU-CGGCCA-GUGGCCcCGUGAu -3' miRNA: 3'- acAGGAcGUCGGUgCACCGGuGCACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 101042 | 0.66 | 0.801368 |
Target: 5'- gGUCCUGCAuGCC---UGcGCCuGCGUGAc -3' miRNA: 3'- aCAGGACGU-CGGugcAC-CGG-UGCACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 52885 | 0.66 | 0.810064 |
Target: 5'- gGUCCUcGCGGCCcCGagccccgcaUGGUCuGCGUGGc -3' miRNA: 3'- aCAGGA-CGUCGGuGC---------ACCGG-UGCACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 108415 | 0.66 | 0.835189 |
Target: 5'- cUGUCCgucugacgugGCGGCCAgGUGGaCGCaGUGc -3' miRNA: 3'- -ACAGGa---------CGUCGGUgCACCgGUG-CACu -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 151512 | 1.09 | 0.001842 |
Target: 5'- uUGUCCUGCAGCCACGUGGCCACGUGAg -3' miRNA: 3'- -ACAGGACGUCGGUGCACCGGUGCACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 53338 | 0.77 | 0.269286 |
Target: 5'- gGcCCgGCGGCCGCGgGGCgGCGUGAg -3' miRNA: 3'- aCaGGaCGUCGGUGCaCCGgUGCACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 33342 | 0.76 | 0.275608 |
Target: 5'- gUGcUCCgggGCAGCCGgGUGGCCGCcgGUGGg -3' miRNA: 3'- -AC-AGGa--CGUCGGUgCACCGGUG--CACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 33220 | 0.72 | 0.490452 |
Target: 5'- gUGcUCCgggGCAGCCGgGUGGCCGCc--- -3' miRNA: 3'- -AC-AGGa--CGUCGGUgCACCGGUGcacu -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 157519 | 0.7 | 0.577764 |
Target: 5'- aGUCCguggccgcGCAGaCCACgGUGGUCGCGgUGAg -3' miRNA: 3'- aCAGGa-------CGUC-GGUG-CACCGGUGC-ACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 3728 | 0.67 | 0.755835 |
Target: 5'- gGUCUcugGgGGCCGCGUGGCCcuucagcccgGgGUGGg -3' miRNA: 3'- aCAGGa--CgUCGGUGCACCGG----------UgCACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 47294 | 0.67 | 0.746378 |
Target: 5'- cGUCCUGCAGCCGggacuccuccCG-GGCCuCcUGGa -3' miRNA: 3'- aCAGGACGUCGGU----------GCaCCGGuGcACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 163684 | 0.69 | 0.627828 |
Target: 5'- aGUUgUGCAGgCGCGUGGgcCUugGUGGg -3' miRNA: 3'- aCAGgACGUCgGUGCACC--GGugCACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 58959 | 0.67 | 0.774424 |
Target: 5'- gGUgCUGCAGCCcucgagggagACgGUGGCCACcUGc -3' miRNA: 3'- aCAgGACGUCGG----------UG-CACCGGUGcACu -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 55183 | 0.69 | 0.677962 |
Target: 5'- cGUCCcaggcUGCGGCCGCGgcgGGCgaGCGUc- -3' miRNA: 3'- aCAGG-----ACGUCGGUGCa--CCGg-UGCAcu -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 42626 | 0.68 | 0.697819 |
Target: 5'- cGUgCUGaCGuGCCACGccagcGGCCGCGUGu -3' miRNA: 3'- aCAgGAC-GU-CGGUGCa----CCGGUGCACu -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 50087 | 0.67 | 0.792523 |
Target: 5'- cGUCCacgGCGGCCcCGcuuguccGGCCACGcgGAc -3' miRNA: 3'- aCAGGa--CGUCGGuGCa------CCGGUGCa-CU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 55928 | 0.66 | 0.826983 |
Target: 5'- aUGUCC-GCGGCCGUG-GGCUgcuGCGUGc -3' miRNA: 3'- -ACAGGaCGUCGGUGCaCCGG---UGCACu -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 4355 | 0.68 | 0.687913 |
Target: 5'- -cUCUU-CAGCgACGUGGCCACGg-- -3' miRNA: 3'- acAGGAcGUCGgUGCACCGGUGCacu -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 33099 | 0.68 | 0.687913 |
Target: 5'- -cUCUgggGCAGCCGgGUGGCCGCc--- -3' miRNA: 3'- acAGGa--CGUCGGUgCACCGGUGcacu -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 97552 | 0.7 | 0.587728 |
Target: 5'- aGUUCUGCGGCUACGU--CCuCGUGAg -3' miRNA: 3'- aCAGGACGUCGGUGCAccGGuGCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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