Results 81 - 100 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29131 | 3' | -55.7 | NC_006146.1 | + | 30145 | 0.68 | 0.875356 |
Target: 5'- gGGGGugGGCAugg-CCACGcaUCCGagagcGGCa -3' miRNA: 3'- -CUCCugCCGUuugaGGUGC--AGGU-----CCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 101955 | 0.68 | 0.836931 |
Target: 5'- uGAGacaACGGCGGAgauCUCCugGgcCCAGGCc -3' miRNA: 3'- -CUCc--UGCCGUUU---GAGGugCa-GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 104347 | 0.68 | 0.852899 |
Target: 5'- -cGGcccuUGGCGGACUuuagccUCACGUCCAGGa -3' miRNA: 3'- cuCCu---GCCGUUUGA------GGUGCAGGUCCg -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 151457 | 0.68 | 0.868077 |
Target: 5'- cAGGACGaaGCGGcGCgCCGCGUCCAcguuGGCu -3' miRNA: 3'- cUCCUGC--CGUU-UGaGGUGCAGGU----CCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 110847 | 0.68 | 0.836931 |
Target: 5'- cGAGG-CGGCGcccgaucagaggGACgCUGCGUCuCGGGCu -3' miRNA: 3'- -CUCCuGCCGU------------UUGaGGUGCAG-GUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 54924 | 0.68 | 0.874637 |
Target: 5'- aGGGAcCGGCAGuaggcCUCgACGUCUgcccgcgGGGCg -3' miRNA: 3'- cUCCU-GCCGUUu----GAGgUGCAGG-------UCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 49471 | 0.68 | 0.875356 |
Target: 5'- cGGGAUGGUGAGggCCGCGgugucggCCAGGg -3' miRNA: 3'- cUCCUGCCGUUUgaGGUGCa------GGUCCg -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 100103 | 0.68 | 0.875356 |
Target: 5'- -cGGACGGUGGACaggagUCUGCGgucCCGGGUu -3' miRNA: 3'- cuCCUGCCGUUUG-----AGGUGCa--GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 159198 | 0.68 | 0.878207 |
Target: 5'- aGAGGACagaaguugguGGCAAAUaUCUGCGUggauaccguggggggCCAGGCu -3' miRNA: 3'- -CUCCUG----------CCGUUUG-AGGUGCA---------------GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 71262 | 0.68 | 0.836931 |
Target: 5'- gGGGGGCGGC---CUCUACGccuuccUCCGGaGCa -3' miRNA: 3'- -CUCCUGCCGuuuGAGGUGC------AGGUC-CG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 101692 | 0.68 | 0.84501 |
Target: 5'- aGAGGACGGUcuccgcccAAGC-CCACGUCCc--- -3' miRNA: 3'- -CUCCUGCCG--------UUUGaGGUGCAGGuccg -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 145006 | 0.68 | 0.852899 |
Target: 5'- aAGGugGGCAGGgaggagcuCUCCACcacaauGUucCCGGGCa -3' miRNA: 3'- cUCCugCCGUUU--------GAGGUG------CA--GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 157575 | 0.68 | 0.86059 |
Target: 5'- uAGGccGCGGCcGACUCCAcCGcCCuGGUg -3' miRNA: 3'- cUCC--UGCCGuUUGAGGU-GCaGGuCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 33966 | 0.68 | 0.86059 |
Target: 5'- cGGGugGGCGuGgUCCGCuggguccgcugGUCCGGuGCa -3' miRNA: 3'- cUCCugCCGUuUgAGGUG-----------CAGGUC-CG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 34141 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 34048 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 33955 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 33863 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 33770 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 34327 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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