miRNA display CGI


Results 101 - 120 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 101692 0.68 0.84501
Target:  5'- aGAGGACGGUcuccgcccAAGC-CCACGUCCc--- -3'
miRNA:   3'- -CUCCUGCCG--------UUUGaGGUGCAGGuccg -5'
29131 3' -55.7 NC_006146.1 + 75271 0.68 0.84501
Target:  5'- cGGGGAUGGCcgagGAGCcgagaGCGUCCGGGa -3'
miRNA:   3'- -CUCCUGCCG----UUUGagg--UGCAGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 117772 0.68 0.852119
Target:  5'- aGAGGA-GGCAAccgucgcGCUCCccCGggCCGGGCc -3'
miRNA:   3'- -CUCCUgCCGUU-------UGAGGu-GCa-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 126013 0.68 0.852899
Target:  5'- uGGGGGCGGUggGCUUCugcugCUGGGCc -3'
miRNA:   3'- -CUCCUGCCGuuUGAGGugca-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 49275 0.68 0.852899
Target:  5'- aAGGG-GGCGA---UCugGUCCAGGCa -3'
miRNA:   3'- cUCCUgCCGUUugaGGugCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 104347 0.68 0.852899
Target:  5'- -cGGcccuUGGCGGACUuuagccUCACGUCCAGGa -3'
miRNA:   3'- cuCCu---GCCGUUUGA------GGUGCAGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 145006 0.68 0.852899
Target:  5'- aAGGugGGCAGGgaggagcuCUCCACcacaauGUucCCGGGCa -3'
miRNA:   3'- cUCCugCCGUUU--------GAGGUG------CA--GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 156729 0.68 0.85983
Target:  5'- cGGGGGuccagccUGGCGcagacgcucAGCUCCACGgCCAGcGCg -3'
miRNA:   3'- -CUCCU-------GCCGU---------UUGAGGUGCaGGUC-CG- -5'
29131 3' -55.7 NC_006146.1 + 73052 0.68 0.86059
Target:  5'- cGGGGuCGGCGGcccccucCUCCAgGUCguGGUa -3'
miRNA:   3'- -CUCCuGCCGUUu------GAGGUgCAGguCCG- -5'
29131 3' -55.7 NC_006146.1 + 8532 0.68 0.86059
Target:  5'- -cGGGCGcGCcaagGGGCUCCAUcUCCAaGGCg -3'
miRNA:   3'- cuCCUGC-CG----UUUGAGGUGcAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 157575 0.68 0.86059
Target:  5'- uAGGccGCGGCcGACUCCAcCGcCCuGGUg -3'
miRNA:   3'- cUCC--UGCCGuUUGAGGU-GCaGGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 33966 0.68 0.86059
Target:  5'- cGGGugGGCGuGgUCCGCuggguccgcugGUCCGGuGCa -3'
miRNA:   3'- cUCCugCCGUuUgAGGUG-----------CAGGUC-CG- -5'
29131 3' -55.7 NC_006146.1 + 156927 0.68 0.86361
Target:  5'- uGGGuGGCGGCGcugacgGGCUCCGCuacgcugauaaaguuGUCCuGGGCu -3'
miRNA:   3'- -CUC-CUGCCGU------UUGAGGUG---------------CAGG-UCCG- -5'
29131 3' -55.7 NC_006146.1 + 94912 0.68 0.867338
Target:  5'- uGGGugGGCGAGC-CCACGcagacgaUgCAGGg -3'
miRNA:   3'- cUCCugCCGUUUGaGGUGC-------AgGUCCg -5'
29131 3' -55.7 NC_006146.1 + 151457 0.68 0.868077
Target:  5'- cAGGACGaaGCGGcGCgCCGCGUCCAcguuGGCu -3'
miRNA:   3'- cUCCUGC--CGUU-UGaGGUGCAGGU----CCG- -5'
29131 3' -55.7 NC_006146.1 + 41758 0.68 0.868077
Target:  5'- cGGGugGGCuucccgccggAGGCcCUGCGcCCGGGCg -3'
miRNA:   3'- cUCCugCCG----------UUUGaGGUGCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 34167 0.68 0.871014
Target:  5'- aGGGugGGgggugcgcccccagcCGGAC-CCugGUgCCAGGCa -3'
miRNA:   3'- cUCCugCC---------------GUUUGaGGugCA-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 54924 0.68 0.874637
Target:  5'- aGGGAcCGGCAGuaggcCUCgACGUCUgcccgcgGGGCg -3'
miRNA:   3'- cUCCU-GCCGUUu----GAGgUGCAGG-------UCCG- -5'
29131 3' -55.7 NC_006146.1 + 49471 0.68 0.875356
Target:  5'- cGGGAUGGUGAGggCCGCGgugucggCCAGGg -3'
miRNA:   3'- cUCCUGCCGUUUgaGGUGCa------GGUCCg -5'
29131 3' -55.7 NC_006146.1 + 30145 0.68 0.875356
Target:  5'- gGGGGugGGCAugg-CCACGcaUCCGagagcGGCa -3'
miRNA:   3'- -CUCCugCCGUuugaGGUGC--AGGU-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.