miRNA display CGI


Results 101 - 120 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 70796 0.79 0.30592
Target:  5'- cGGGACcGCAGACUCCuguccacCGUCCGGGUg -3'
miRNA:   3'- cUCCUGcCGUUUGAGGu------GCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 71262 0.68 0.836931
Target:  5'- gGGGGGCGGC---CUCUACGccuuccUCCGGaGCa -3'
miRNA:   3'- -CUCCUGCCGuuuGAGGUGC------AGGUC-CG- -5'
29131 3' -55.7 NC_006146.1 + 73052 0.68 0.86059
Target:  5'- cGGGGuCGGCGGcccccucCUCCAgGUCguGGUa -3'
miRNA:   3'- -CUCCuGCCGUUu------GAGGUgCAGguCCG- -5'
29131 3' -55.7 NC_006146.1 + 75271 0.68 0.84501
Target:  5'- cGGGGAUGGCcgagGAGCcgagaGCGUCCGGGa -3'
miRNA:   3'- -CUCCUGCCG----UUUGagg--UGCAGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 76250 0.66 0.94051
Target:  5'- gGAGGAUGGCcaGAAUgugUCAgGUgCGGGUa -3'
miRNA:   3'- -CUCCUGCCG--UUUGa--GGUgCAgGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 78785 0.77 0.404696
Target:  5'- uGAGGAUGGUGuugagcagcaauACUCCcugggaggcccacGCGUCCAGGCa -3'
miRNA:   3'- -CUCCUGCCGUu-----------UGAGG-------------UGCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 81822 0.67 0.898471
Target:  5'- uGAGGAgccguggcccaacacCaGCAGGCUCCAUacCCGGGCu -3'
miRNA:   3'- -CUCCU---------------GcCGUUUGAGGUGcaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 83059 0.66 0.94051
Target:  5'- aGGGGaAUGGCGucugugacCUCCugGUCgGcGGCg -3'
miRNA:   3'- -CUCC-UGCCGUuu------GAGGugCAGgU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 84433 0.67 0.89194
Target:  5'- uGAGGAUGGagaaggaaggccuccUAAGCUCCAaGUUCAaGGCc -3'
miRNA:   3'- -CUCCUGCC---------------GUUUGAGGUgCAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 84960 0.73 0.606152
Target:  5'- uGGGGGgGGCAAAgUCC-CGcaggccaUCCAGGCc -3'
miRNA:   3'- -CUCCUgCCGUUUgAGGuGC-------AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 89697 0.66 0.94051
Target:  5'- cGGGGaACGGCcugGGAUaCaCGgGUCCGGGCc -3'
miRNA:   3'- -CUCC-UGCCG---UUUGaG-GUgCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 92928 0.66 0.935754
Target:  5'- aGAGGAcCGGCAc-CUCCAaggCCAccGGCu -3'
miRNA:   3'- -CUCCU-GCCGUuuGAGGUgcaGGU--CCG- -5'
29131 3' -55.7 NC_006146.1 + 93818 0.74 0.556827
Target:  5'- -cGGACGGC------CACGUCCAGGCa -3'
miRNA:   3'- cuCCUGCCGuuugagGUGCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 93933 0.72 0.627479
Target:  5'- aGGcGGCGGCgGGGCUCCGCucuccGUCcCAGGCg -3'
miRNA:   3'- cUC-CUGCCG-UUUGAGGUG-----CAG-GUCCG- -5'
29131 3' -55.7 NC_006146.1 + 94776 0.7 0.747342
Target:  5'- aGAGGGCccaguuGCGGGCcacgUCCACGUaggCCAGGCc -3'
miRNA:   3'- -CUCCUGc-----CGUUUG----AGGUGCA---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 94868 0.66 0.94051
Target:  5'- aGGGGGCGG-AGAUUCCACa-CgAGGUa -3'
miRNA:   3'- -CUCCUGCCgUUUGAGGUGcaGgUCCG- -5'
29131 3' -55.7 NC_006146.1 + 94912 0.68 0.867338
Target:  5'- uGGGugGGCGAGC-CCACGcagacgaUgCAGGg -3'
miRNA:   3'- cUCCugCCGUUUGaGGUGC-------AgGUCCg -5'
29131 3' -55.7 NC_006146.1 + 98241 0.67 0.907839
Target:  5'- cGGGGugcAgGGCGGACagCACGUCCaacagaaAGGCc -3'
miRNA:   3'- -CUCC---UgCCGUUUGagGUGCAGG-------UCCG- -5'
29131 3' -55.7 NC_006146.1 + 98301 0.66 0.913794
Target:  5'- uGGGGCugagGGCGuGCUCCguggccgucuggcACGgggCCGGGCg -3'
miRNA:   3'- cUCCUG----CCGUuUGAGG-------------UGCa--GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 100103 0.68 0.875356
Target:  5'- -cGGACGGUGGACaggagUCUGCGgucCCGGGUu -3'
miRNA:   3'- cuCCUGCCGUUUG-----AGGUGCa--GGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.