Results 101 - 120 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29131 | 3' | -55.7 | NC_006146.1 | + | 57946 | 0.66 | 0.930764 |
Target: 5'- gGAGGucuucuCGGaCAAGUUCUACGacgaggaguucuUCCAGGCg -3' miRNA: 3'- -CUCCu-----GCC-GUUUGAGGUGC------------AGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 57822 | 0.72 | 0.647805 |
Target: 5'- cGAGGcCGGguG-CUCCAaccUCCAGGCa -3' miRNA: 3'- -CUCCuGCCguUuGAGGUgc-AGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 57072 | 0.67 | 0.88242 |
Target: 5'- gGAGGAagaCGGCGuaguccacgAGCggCGCGUCCuGGCc -3' miRNA: 3'- -CUCCU---GCCGU---------UUGagGUGCAGGuCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 55169 | 0.67 | 0.889265 |
Target: 5'- cAGGGgGGUGA---CCGCGUCCcAGGCu -3' miRNA: 3'- cUCCUgCCGUUugaGGUGCAGG-UCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 54924 | 0.68 | 0.874637 |
Target: 5'- aGGGAcCGGCAGuaggcCUCgACGUCUgcccgcgGGGCg -3' miRNA: 3'- cUCCU-GCCGUUu----GAGgUGCAGG-------UCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 54709 | 0.8 | 0.259881 |
Target: 5'- aGGGGACGGCGGGC-CCGgGUCaGGGCg -3' miRNA: 3'- -CUCCUGCCGUUUGaGGUgCAGgUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 54038 | 0.71 | 0.69826 |
Target: 5'- gGAGGGCGGCcAugUCgGCGguggUCAGGg -3' miRNA: 3'- -CUCCUGCCGuUugAGgUGCa---GGUCCg -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 53206 | 0.69 | 0.811622 |
Target: 5'- gGGGGGCGGCGugccaAACUCCGCGggCCu--- -3' miRNA: 3'- -CUCCUGCCGU-----UUGAGGUGCa-GGuccg -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 52718 | 0.67 | 0.88242 |
Target: 5'- aGGGGGCGGCcggccagaAAGCUCU-UGaCCAGGUa -3' miRNA: 3'- -CUCCUGCCG--------UUUGAGGuGCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 50422 | 0.72 | 0.657954 |
Target: 5'- aGGGACGGCAggcaggccgcaAGCUUCGCGgCCAGauGCa -3' miRNA: 3'- cUCCUGCCGU-----------UUGAGGUGCaGGUC--CG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 50067 | 0.67 | 0.908445 |
Target: 5'- cAGGAa-GCGGACgUCCucuuCGUCCAcGGCg -3' miRNA: 3'- cUCCUgcCGUUUG-AGGu---GCAGGU-CCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 49533 | 0.7 | 0.76634 |
Target: 5'- cGGGGGCuccucugggGGCGGAggCCACGccggCCAGGCc -3' miRNA: 3'- -CUCCUG---------CCGUUUgaGGUGCa---GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 49471 | 0.68 | 0.875356 |
Target: 5'- cGGGAUGGUGAGggCCGCGgugucggCCAGGg -3' miRNA: 3'- cUCCUGCCGUUUgaGGUGCa------GGUCCg -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 49275 | 0.68 | 0.852899 |
Target: 5'- aAGGG-GGCGA---UCugGUCCAGGCa -3' miRNA: 3'- cUCCUgCCGUUugaGGugCAGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 49077 | 0.67 | 0.895886 |
Target: 5'- aAGGAgGGCugAGGCUCCGgcUGUggcUCAGGCg -3' miRNA: 3'- cUCCUgCCG--UUUGAGGU--GCA---GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 48027 | 0.71 | 0.727945 |
Target: 5'- gGAGGcACGGCGGGCcggcucgggucgUCCAgCGccCCGGGCa -3' miRNA: 3'- -CUCC-UGCCGUUUG------------AGGU-GCa-GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 47712 | 0.7 | 0.737689 |
Target: 5'- aGAGGugGGgAgcagcgcccggAGCUCguCGUCCGGGg -3' miRNA: 3'- -CUCCugCCgU-----------UUGAGguGCAGGUCCg -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 46833 | 0.66 | 0.94051 |
Target: 5'- -cGGugGGCAugacguACUCCAgaaaGUUguGGUa -3' miRNA: 3'- cuCCugCCGUu-----UGAGGUg---CAGguCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 44996 | 0.74 | 0.537006 |
Target: 5'- -cGGAgGcGCAGACUCCACGagCCGGaGCu -3' miRNA: 3'- cuCCUgC-CGUUUGAGGUGCa-GGUC-CG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 44777 | 0.66 | 0.930764 |
Target: 5'- -cGGGCGGgGAAC-CCAgG-CCGGGg -3' miRNA: 3'- cuCCUGCCgUUUGaGGUgCaGGUCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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