miRNA display CGI


Results 121 - 140 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 44248 0.69 0.802853
Target:  5'- -cGGGCGGCGGugUCCAuUGcCCcugcGGGCc -3'
miRNA:   3'- cuCCUGCCGUUugAGGU-GCaGG----UCCG- -5'
29131 3' -55.7 NC_006146.1 + 43661 0.67 0.889265
Target:  5'- aGAGGGgccCGGCucGCaUUCGC-UCCAGGCc -3'
miRNA:   3'- -CUCCU---GCCGuuUG-AGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 43148 0.73 0.597034
Target:  5'- uGAGGuCGGCGAuaaucuuCUCCAgGcucUCCGGGCc -3'
miRNA:   3'- -CUCCuGCCGUUu------GAGGUgC---AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 42724 0.68 0.84501
Target:  5'- -cGGGCuGGCAg---CCGCGgaUCCGGGCg -3'
miRNA:   3'- cuCCUG-CCGUuugaGGUGC--AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 42340 0.66 0.925537
Target:  5'- cGAGG-CcGCGAACUgCCGC-UCCAGGa -3'
miRNA:   3'- -CUCCuGcCGUUUGA-GGUGcAGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 41998 0.78 0.357954
Target:  5'- gGGGGGCGGaCGAGCacgaagcCCGCGUUCGGGCc -3'
miRNA:   3'- -CUCCUGCC-GUUUGa------GGUGCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 41758 0.68 0.868077
Target:  5'- cGGGugGGCuucccgccggAGGCcCUGCGcCCGGGCg -3'
miRNA:   3'- cUCCugCCG----------UUUGaGGUGCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 41400 0.66 0.925537
Target:  5'- uGAGGugGGCcuGAugUCCGCcugggGGGCa -3'
miRNA:   3'- -CUCCugCCG--UUugAGGUGcagg-UCCG- -5'
29131 3' -55.7 NC_006146.1 + 39897 0.67 0.895886
Target:  5'- -cGGcUGGCuuuugAGAUugUCCACGUCCAGGg -3'
miRNA:   3'- cuCCuGCCG-----UUUG--AGGUGCAGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 39677 0.74 0.514522
Target:  5'- gGAGG-CGGCGGGCUCCugGgccugcagcgccgcUCCggAGGCa -3'
miRNA:   3'- -CUCCuGCCGUUUGAGGugC--------------AGG--UCCG- -5'
29131 3' -55.7 NC_006146.1 + 38962 0.72 0.627479
Target:  5'- aGAGGugGGCAAGggaUCCAC-UCCcGGUg -3'
miRNA:   3'- -CUCCugCCGUUUg--AGGUGcAGGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 35721 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35628 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35535 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35442 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35349 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35256 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35163 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35070 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 34977 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.