miRNA display CGI


Results 101 - 120 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 34048 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 34977 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35070 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 70796 0.79 0.30592
Target:  5'- cGGGACcGCAGACUCCuguccacCGUCCGGGUg -3'
miRNA:   3'- cUCCUGcCGUUUGAGGu------GCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 73052 0.68 0.86059
Target:  5'- cGGGGuCGGCGGcccccucCUCCAgGUCguGGUa -3'
miRNA:   3'- -CUCCuGCCGUUu------GAGGUgCAGguCCG- -5'
29131 3' -55.7 NC_006146.1 + 41758 0.68 0.868077
Target:  5'- cGGGugGGCuucccgccggAGGCcCUGCGcCCGGGCg -3'
miRNA:   3'- cUCCugCCG----------UUUGaGGUGCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 30145 0.68 0.875356
Target:  5'- gGGGGugGGCAugg-CCACGcaUCCGagagcGGCa -3'
miRNA:   3'- -CUCCugCCGUuugaGGUGC--AGGU-----CCG- -5'
29131 3' -55.7 NC_006146.1 + 33955 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 57072 0.67 0.88242
Target:  5'- gGAGGAagaCGGCGuaguccacgAGCggCGCGUCCuGGCc -3'
miRNA:   3'- -CUCCU---GCCGU---------UUGagGUGCAGGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 43661 0.67 0.889265
Target:  5'- aGAGGGgccCGGCucGCaUUCGC-UCCAGGCc -3'
miRNA:   3'- -CUCCU---GCCGuuUG-AGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 103564 0.67 0.889265
Target:  5'- cGAGGAUgGGCucGCccgggCCugGgCCGGGCu -3'
miRNA:   3'- -CUCCUG-CCGuuUGa----GGugCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 84433 0.67 0.89194
Target:  5'- uGAGGAUGGagaaggaaggccuccUAAGCUCCAaGUUCAaGGCc -3'
miRNA:   3'- -CUCCUGCC---------------GUUUGAGGUgCAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 34792 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35163 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 62424 0.67 0.88242
Target:  5'- cGGGugGGCuGGCUgaaGCGgccUCCGGGCu -3'
miRNA:   3'- cUCCugCCGuUUGAgg-UGC---AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 33249 0.73 0.585918
Target:  5'- gGGGGugGG--GGCUCCACGaacccgcuugccuUCCAGGUg -3'
miRNA:   3'- -CUCCugCCguUUGAGGUGC-------------AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 44996 0.74 0.537006
Target:  5'- -cGGAgGcGCAGACUCCACGagCCGGaGCu -3'
miRNA:   3'- cuCCUgC-CGUUUGAGGUGCa-GGUC-CG- -5'
29131 3' -55.7 NC_006146.1 + 39677 0.74 0.514522
Target:  5'- gGAGG-CGGCGGGCUCCugGgccugcagcgccgcUCCggAGGCa -3'
miRNA:   3'- -CUCCuGCCGUUUGAGGugC--------------AGG--UCCG- -5'
29131 3' -55.7 NC_006146.1 + 78785 0.77 0.404696
Target:  5'- uGAGGAUGGUGuugagcagcaauACUCCcugggaggcccacGCGUCCAGGCa -3'
miRNA:   3'- -CUCCUGCCGUu-----------UGAGG-------------UGCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 41998 0.78 0.357954
Target:  5'- gGGGGGCGGaCGAGCacgaagcCCGCGUUCGGGCc -3'
miRNA:   3'- -CUCCUGCC-GUUUGa------GGUGCAGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.