Results 81 - 100 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29131 | 3' | -55.7 | NC_006146.1 | + | 35628 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 35535 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 35442 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 35349 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 35256 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 35163 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 35070 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 127582 | 0.69 | 0.820229 |
Target: 5'- -uGGGCGGCcGAggCCGCGccggCCGGGUg -3' miRNA: 3'- cuCCUGCCGuUUgaGGUGCa---GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 71262 | 0.68 | 0.836931 |
Target: 5'- gGGGGGCGGC---CUCUACGccuuccUCCGGaGCa -3' miRNA: 3'- -CUCCUGCCGuuuGAGGUGC------AGGUC-CG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 101955 | 0.68 | 0.836931 |
Target: 5'- uGAGacaACGGCGGAgauCUCCugGgcCCAGGCc -3' miRNA: 3'- -CUCc--UGCCGUUU---GAGGugCa-GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 62424 | 0.67 | 0.88242 |
Target: 5'- cGGGugGGCuGGCUgaaGCGgccUCCGGGCu -3' miRNA: 3'- cUCCugCCGuUUGAgg-UGC---AGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 30145 | 0.68 | 0.875356 |
Target: 5'- gGGGGugGGCAugg-CCACGcaUCCGagagcGGCa -3' miRNA: 3'- -CUCCugCCGUuugaGGUGC--AGGU-----CCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 41758 | 0.68 | 0.868077 |
Target: 5'- cGGGugGGCuucccgccggAGGCcCUGCGcCCGGGCg -3' miRNA: 3'- cUCCugCCG----------UUUGaGGUGCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 73052 | 0.68 | 0.86059 |
Target: 5'- cGGGGuCGGCGGcccccucCUCCAgGUCguGGUa -3' miRNA: 3'- -CUCCuGCCGUUu------GAGGUgCAGguCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 8532 | 0.68 | 0.86059 |
Target: 5'- -cGGGCGcGCcaagGGGCUCCAUcUCCAaGGCg -3' miRNA: 3'- cuCCUGC-CG----UUUGAGGUGcAGGU-CCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 49275 | 0.68 | 0.852899 |
Target: 5'- aAGGG-GGCGA---UCugGUCCAGGCa -3' miRNA: 3'- cUCCUgCCGUUugaGGugCAGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 117772 | 0.68 | 0.852119 |
Target: 5'- aGAGGA-GGCAAccgucgcGCUCCccCGggCCGGGCc -3' miRNA: 3'- -CUCCUgCCGUU-------UGAGGu-GCa-GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 75271 | 0.68 | 0.84501 |
Target: 5'- cGGGGAUGGCcgagGAGCcgagaGCGUCCGGGa -3' miRNA: 3'- -CUCCUGCCG----UUUGagg--UGCAGGUCCg -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 110847 | 0.68 | 0.836931 |
Target: 5'- cGAGG-CGGCGcccgaucagaggGACgCUGCGUCuCGGGCu -3' miRNA: 3'- -CUCCuGCCGU------------UUGaGGUGCAG-GUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 34977 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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