miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 41400 0.66 0.925537
Target:  5'- uGAGGugGGCcuGAugUCCGCcugggGGGCa -3'
miRNA:   3'- -CUCCugCCG--UUugAGGUGcagg-UCCG- -5'
29131 3' -55.7 NC_006146.1 + 41758 0.68 0.868077
Target:  5'- cGGGugGGCuucccgccggAGGCcCUGCGcCCGGGCg -3'
miRNA:   3'- cUCCugCCG----------UUUGaGGUGCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 41998 0.78 0.357954
Target:  5'- gGGGGGCGGaCGAGCacgaagcCCGCGUUCGGGCc -3'
miRNA:   3'- -CUCCUGCC-GUUUGa------GGUGCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 42340 0.66 0.925537
Target:  5'- cGAGG-CcGCGAACUgCCGC-UCCAGGa -3'
miRNA:   3'- -CUCCuGcCGUUUGA-GGUGcAGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 42724 0.68 0.84501
Target:  5'- -cGGGCuGGCAg---CCGCGgaUCCGGGCg -3'
miRNA:   3'- cuCCUG-CCGUuugaGGUGC--AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 43148 0.73 0.597034
Target:  5'- uGAGGuCGGCGAuaaucuuCUCCAgGcucUCCGGGCc -3'
miRNA:   3'- -CUCCuGCCGUUu------GAGGUgC---AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 43661 0.67 0.889265
Target:  5'- aGAGGGgccCGGCucGCaUUCGC-UCCAGGCc -3'
miRNA:   3'- -CUCCU---GCCGuuUG-AGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 44248 0.69 0.802853
Target:  5'- -cGGGCGGCGGugUCCAuUGcCCcugcGGGCc -3'
miRNA:   3'- cuCCUGCCGUUugAGGU-GCaGG----UCCG- -5'
29131 3' -55.7 NC_006146.1 + 44777 0.66 0.930764
Target:  5'- -cGGGCGGgGAAC-CCAgG-CCGGGg -3'
miRNA:   3'- cuCCUGCCgUUUGaGGUgCaGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 44996 0.74 0.537006
Target:  5'- -cGGAgGcGCAGACUCCACGagCCGGaGCu -3'
miRNA:   3'- cuCCUgC-CGUUUGAGGUGCa-GGUC-CG- -5'
29131 3' -55.7 NC_006146.1 + 46833 0.66 0.94051
Target:  5'- -cGGugGGCAugacguACUCCAgaaaGUUguGGUa -3'
miRNA:   3'- cuCCugCCGUu-----UGAGGUg---CAGguCCG- -5'
29131 3' -55.7 NC_006146.1 + 47712 0.7 0.737689
Target:  5'- aGAGGugGGgAgcagcgcccggAGCUCguCGUCCGGGg -3'
miRNA:   3'- -CUCCugCCgU-----------UUGAGguGCAGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 48027 0.71 0.727945
Target:  5'- gGAGGcACGGCGGGCcggcucgggucgUCCAgCGccCCGGGCa -3'
miRNA:   3'- -CUCC-UGCCGUUUG------------AGGU-GCa-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 49077 0.67 0.895886
Target:  5'- aAGGAgGGCugAGGCUCCGgcUGUggcUCAGGCg -3'
miRNA:   3'- cUCCUgCCG--UUUGAGGU--GCA---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 49275 0.68 0.852899
Target:  5'- aAGGG-GGCGA---UCugGUCCAGGCa -3'
miRNA:   3'- cUCCUgCCGUUugaGGugCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 49471 0.68 0.875356
Target:  5'- cGGGAUGGUGAGggCCGCGgugucggCCAGGg -3'
miRNA:   3'- cUCCUGCCGUUUgaGGUGCa------GGUCCg -5'
29131 3' -55.7 NC_006146.1 + 49533 0.7 0.76634
Target:  5'- cGGGGGCuccucugggGGCGGAggCCACGccggCCAGGCc -3'
miRNA:   3'- -CUCCUG---------CCGUUUgaGGUGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 50067 0.67 0.908445
Target:  5'- cAGGAa-GCGGACgUCCucuuCGUCCAcGGCg -3'
miRNA:   3'- cUCCUgcCGUUUG-AGGu---GCAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 50422 0.72 0.657954
Target:  5'- aGGGACGGCAggcaggccgcaAGCUUCGCGgCCAGauGCa -3'
miRNA:   3'- cUCCUGCCGU-----------UUGAGGUGCaGGUC--CG- -5'
29131 3' -55.7 NC_006146.1 + 52718 0.67 0.88242
Target:  5'- aGGGGGCGGCcggccagaAAGCUCU-UGaCCAGGUa -3'
miRNA:   3'- -CUCCUGCCG--------UUUGAGGuGCaGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.