miRNA display CGI


Results 81 - 100 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 156729 0.68 0.85983
Target:  5'- cGGGGGuccagccUGGCGcagacgcucAGCUCCACGgCCAGcGCg -3'
miRNA:   3'- -CUCCU-------GCCGU---------UUGAGGUGCaGGUC-CG- -5'
29131 3' -55.7 NC_006146.1 + 49275 0.68 0.852899
Target:  5'- aAGGG-GGCGA---UCugGUCCAGGCa -3'
miRNA:   3'- cUCCUgCCGUUugaGGugCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 104347 0.68 0.852899
Target:  5'- -cGGcccuUGGCGGACUuuagccUCACGUCCAGGa -3'
miRNA:   3'- cuCCu---GCCGUUUGA------GGUGCAGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 126013 0.68 0.852899
Target:  5'- uGGGGGCGGUggGCUUCugcugCUGGGCc -3'
miRNA:   3'- -CUCCUGCCGuuUGAGGugca-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 145006 0.68 0.852899
Target:  5'- aAGGugGGCAGGgaggagcuCUCCACcacaauGUucCCGGGCa -3'
miRNA:   3'- cUCCugCCGUUU--------GAGGUG------CA--GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 117772 0.68 0.852119
Target:  5'- aGAGGA-GGCAAccgucgcGCUCCccCGggCCGGGCc -3'
miRNA:   3'- -CUCCUgCCGUU-------UGAGGu-GCa-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 75271 0.68 0.84501
Target:  5'- cGGGGAUGGCcgagGAGCcgagaGCGUCCGGGa -3'
miRNA:   3'- -CUCCUGCCG----UUUGagg--UGCAGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 42724 0.68 0.84501
Target:  5'- -cGGGCuGGCAg---CCGCGgaUCCGGGCg -3'
miRNA:   3'- cuCCUG-CCGUuugaGGUGC--AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 60599 0.68 0.84501
Target:  5'- cAGGGCGGCGAugaacGC-CUACGcCgAGGCc -3'
miRNA:   3'- cUCCUGCCGUU-----UGaGGUGCaGgUCCG- -5'
29131 3' -55.7 NC_006146.1 + 101692 0.68 0.84501
Target:  5'- aGAGGACGGUcuccgcccAAGC-CCACGUCCc--- -3'
miRNA:   3'- -CUCCUGCCG--------UUUGaGGUGCAGGuccg -5'
29131 3' -55.7 NC_006146.1 + 110847 0.68 0.836931
Target:  5'- cGAGG-CGGCGcccgaucagaggGACgCUGCGUCuCGGGCu -3'
miRNA:   3'- -CUCCuGCCGU------------UUGaGGUGCAG-GUCCG- -5'
29131 3' -55.7 NC_006146.1 + 101955 0.68 0.836931
Target:  5'- uGAGacaACGGCGGAgauCUCCugGgcCCAGGCc -3'
miRNA:   3'- -CUCc--UGCCGUUU---GAGGugCa-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 71262 0.68 0.836931
Target:  5'- gGGGGGCGGC---CUCUACGccuuccUCCGGaGCa -3'
miRNA:   3'- -CUCCUGCCGuuuGAGGUGC------AGGUC-CG- -5'
29131 3' -55.7 NC_006146.1 + 4315 0.68 0.836931
Target:  5'- cGGGGAUGGCAAGaUCCAgGg-CGGGUc -3'
miRNA:   3'- -CUCCUGCCGUUUgAGGUgCagGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 127582 0.69 0.820229
Target:  5'- -uGGGCGGCcGAggCCGCGccggCCGGGUg -3'
miRNA:   3'- cuCCUGCCGuUUgaGGUGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 116756 0.69 0.818521
Target:  5'- gGAGGAgGGCAGgggggccgcuacuACUCCACGgaCCugcagacgcucaaGGGCg -3'
miRNA:   3'- -CUCCUgCCGUU-------------UGAGGUGCa-GG-------------UCCG- -5'
29131 3' -55.7 NC_006146.1 + 125364 0.69 0.811622
Target:  5'- cAGGGCGGcCAAGC-CCAaggagGcCCAGGCc -3'
miRNA:   3'- cUCCUGCC-GUUUGaGGUg----CaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35721 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35628 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 35535 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.