Results 21 - 40 of 72 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 152340 | 0.68 | 0.811664 |
Target: 5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3' miRNA: 3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5' |
|||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 143106 | 0.68 | 0.811664 |
Target: 5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3' miRNA: 3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5' |
|||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 149262 | 0.68 | 0.811664 |
Target: 5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3' miRNA: 3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5' |
|||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 23768 | 0.68 | 0.784577 |
Target: 5'- -cGCGgccgAGAAuGgcGGCCUGCgcgucugggGCCCGc -3' miRNA: 3'- gaCGCa---UCUU-CauCCGGACGa--------CGGGU- -5' |
|||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 36966 | 0.68 | 0.765813 |
Target: 5'- aCUGCGUcacuGUAGGUgaaCUGCgGCCCAc -3' miRNA: 3'- -GACGCAucuuCAUCCG---GACGaCGGGU- -5' |
|||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 155418 | 0.68 | 0.811664 |
Target: 5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3' miRNA: 3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5' |
|||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 58879 | 0.67 | 0.83727 |
Target: 5'- cCUGU---GAAGgAGGCCUGCaacGCCCAc -3' miRNA: 3'- -GACGcauCUUCaUCCGGACGa--CGGGU- -5' |
|||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 8946 | 0.67 | 0.83727 |
Target: 5'- aUGgGgcuggGGAAGUuuaGCCUGCUGCCa- -3' miRNA: 3'- gACgCa----UCUUCAuc-CGGACGACGGgu -5' |
|||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 94953 | 0.67 | 0.861183 |
Target: 5'- gCUGCgGUAGAGGgGGGUgUGCaGCCa- -3' miRNA: 3'- -GACG-CAUCUUCaUCCGgACGaCGGgu -5' |
|||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 125996 | 0.67 | 0.861183 |
Target: 5'- gCUGCGaggcuUGGGAGUGGGggcggugggcuUCUGCUGCUgGg -3' miRNA: 3'- -GACGC-----AUCUUCAUCC-----------GGACGACGGgU- -5' |
|||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 65082 | 0.67 | 0.853412 |
Target: 5'- -cGCGgggcAGGAG-GGGCCcuauucUGCUGCCUAc -3' miRNA: 3'- gaCGCa---UCUUCaUCCGG------ACGACGGGU- -5' |
|||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 154681 | 0.67 | 0.83727 |
Target: 5'- -gGCcUGGGAGUccGGgguguugaGCCUGCUGCCCc -3' miRNA: 3'- gaCGcAUCUUCA--UC--------CGGACGACGGGu -5' |
|||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 42538 | 0.67 | 0.845439 |
Target: 5'- -gGCGUacuGGGAGgGGGCCUGUccGUCCGu -3' miRNA: 3'- gaCGCA---UCUUCaUCCGGACGa-CGGGU- -5' |
|||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 136713 | 0.66 | 0.873909 |
Target: 5'- -gGCG-GGggGUggccggccgcugccGGGUCcGCUGCCCGg -3' miRNA: 3'- gaCGCaUCuuCA--------------UCCGGaCGACGGGU- -5' |
|||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 94595 | 0.66 | 0.868744 |
Target: 5'- uCUGCGUGGGAGaggaAGaGCC-GCguccaGCCCAc -3' miRNA: 3'- -GACGCAUCUUCa---UC-CGGaCGa----CGGGU- -5' |
|||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 139428 | 0.66 | 0.89679 |
Target: 5'- gCUGUuuaGUAGGAGaAGGCCcccacGgUGCCCGg -3' miRNA: 3'- -GACG---CAUCUUCaUCCGGa----CgACGGGU- -5' |
|||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 24210 | 0.66 | 0.87609 |
Target: 5'- cCUGCG-AGGuucuGUugGGGCCgggGCcGCCCAc -3' miRNA: 3'- -GACGCaUCUu---CA--UCCGGa--CGaCGGGU- -5' |
|||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 120525 | 0.66 | 0.87609 |
Target: 5'- -cGCGUGGAugcGgcGGCgggaCUGCUGgCCAa -3' miRNA: 3'- gaCGCAUCUu--CauCCG----GACGACgGGU- -5' |
|||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 135289 | 0.66 | 0.87609 |
Target: 5'- ---aGUGGggGgcuaAGGCa-GCUGCCCAc -3' miRNA: 3'- gacgCAUCuuCa---UCCGgaCGACGGGU- -5' |
|||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 46453 | 0.66 | 0.89679 |
Target: 5'- -gGCGgcGgcGUAGGCCggaUGCgUGCCg- -3' miRNA: 3'- gaCGCauCuuCAUCCGG---ACG-ACGGgu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home