miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 5' -56.4 NC_006146.1 + 136527 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 136620 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 137270 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 136805 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 136898 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 136991 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 137084 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135969 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135876 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 137549 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 137456 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 137363 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135133 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135226 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135319 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135412 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135505 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135598 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135783 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 137177 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.