miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 5' -56.4 NC_006146.1 + 93925 0.66 0.890118
Target:  5'- -gGCGUAGAAGgcGGCg-GCgggGCuCCGc -3'
miRNA:   3'- gaCGCAUCUUCauCCGgaCGa--CG-GGU- -5'
29131 5' -56.4 NC_006146.1 + 137270 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 167144 0.71 0.645746
Target:  5'- -cGCGUAGaAAGUGGGCaCUGUgccaggGCCUu -3'
miRNA:   3'- gaCGCAUC-UUCAUCCG-GACGa-----CGGGu -5'
29131 5' -56.4 NC_006146.1 + 51837 0.71 0.594365
Target:  5'- -gGCGUGGAGGggggcucgGGGCCUG--GCCCGa -3'
miRNA:   3'- gaCGCAUCUUCa-------UCCGGACgaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 41389 0.73 0.523772
Target:  5'- uCUGCuGUuucuGAGGUGGGCCUGaUGUCCGc -3'
miRNA:   3'- -GACG-CAu---CUUCAUCCGGACgACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 151718 1.09 0.002534
Target:  5'- cCUGCGUAGAAGUAGGCCUGCUGCCCAa -3'
miRNA:   3'- -GACGCAUCUUCAUCCGGACGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 125996 0.67 0.861183
Target:  5'- gCUGCGaggcuUGGGAGUGGGggcggugggcuUCUGCUGCUgGg -3'
miRNA:   3'- -GACGC-----AUCUUCAUCC-----------GGACGACGGgU- -5'
29131 5' -56.4 NC_006146.1 + 146184 0.68 0.811664
Target:  5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3'
miRNA:   3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 40018 0.7 0.696844
Target:  5'- -gGCGUAGcAGgGGGCCUGCUggggGCCg- -3'
miRNA:   3'- gaCGCAUCuUCaUCCGGACGA----CGGgu -5'
29131 5' -56.4 NC_006146.1 + 24210 0.66 0.87609
Target:  5'- cCUGCG-AGGuucuGUugGGGCCgggGCcGCCCAc -3'
miRNA:   3'- -GACGCaUCUu---CA--UCCGGa--CGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 59748 0.7 0.676506
Target:  5'- --aCGUAGAGGgaggAGGCCaGCcGCCCGg -3'
miRNA:   3'- gacGCAUCUUCa---UCCGGaCGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 115129 0.7 0.656022
Target:  5'- -aGCGUGGu----GGCCUcGCUGCCCc -3'
miRNA:   3'- gaCGCAUCuucauCCGGA-CGACGGGu -5'
29131 5' -56.4 NC_006146.1 + 65082 0.67 0.853412
Target:  5'- -cGCGgggcAGGAG-GGGCCcuauucUGCUGCCUAc -3'
miRNA:   3'- gaCGCa---UCUUCaUCCGG------ACGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 42538 0.67 0.845439
Target:  5'- -gGCGUacuGGGAGgGGGCCUGUccGUCCGu -3'
miRNA:   3'- gaCGCA---UCUUCaUCCGGACGa-CGGGU- -5'
29131 5' -56.4 NC_006146.1 + 139643 0.73 0.513926
Target:  5'- aUGUGUugAGGAGgaggAGGCCUGCauggaGCCCAc -3'
miRNA:   3'- gACGCA--UCUUCa---UCCGGACGa----CGGGU- -5'
29131 5' -56.4 NC_006146.1 + 14632 0.74 0.475356
Target:  5'- gCUGCGUGGggGa--GCUcauggUGCUGCCCAa -3'
miRNA:   3'- -GACGCAUCuuCaucCGG-----ACGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 143106 0.68 0.811664
Target:  5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3'
miRNA:   3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 155418 0.68 0.811664
Target:  5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3'
miRNA:   3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 152340 0.68 0.811664
Target:  5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3'
miRNA:   3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 149262 0.68 0.811664
Target:  5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3'
miRNA:   3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.