Results 41 - 60 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 60792 | 0.68 | 0.635432 |
Target: 5'- --aGCCGGaCCAGGUcCAGGGccuGGUCc -3' miRNA: 3'- cuaCGGCCcGGUCUA-GUCCCu--CCAGu -5' |
|||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 45542 | 0.68 | 0.655462 |
Target: 5'- cGUGaCCaGGGCCAGGcaGGGGAGGg-- -3' miRNA: 3'- cUAC-GG-CCCGGUCUagUCCCUCCagu -5' |
|||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 64238 | 0.68 | 0.675421 |
Target: 5'- --cGCCuGGGCCGGggCGGGaGGGG-CGu -3' miRNA: 3'- cuaCGG-CCCGGUCuaGUCC-CUCCaGU- -5' |
|||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 168341 | 0.68 | 0.645452 |
Target: 5'- cGggGCCuggcggGGGCCAGcgCGGGGucccggggcgggGGGUCGg -3' miRNA: 3'- -CuaCGG------CCCGGUCuaGUCCC------------UCCAGU- -5' |
|||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 167409 | 0.68 | 0.645452 |
Target: 5'- cGggGCCuggcggGGGCCAGcgCGGGGucccggggcgggGGGUCGg -3' miRNA: 3'- -CuaCGG------CCCGGUCuaGUCCC------------UCCAGU- -5' |
|||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 48579 | 0.69 | 0.585438 |
Target: 5'- ---uCCgGGGCCucggGGGUCAGGGAGGcCAg -3' miRNA: 3'- cuacGG-CCCGG----UCUAGUCCCUCCaGU- -5' |
|||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 28276 | 0.69 | 0.575509 |
Target: 5'- --gGCCGGGUCucGGGUCuGGG-GGUCu -3' miRNA: 3'- cuaCGGCCCGG--UCUAGuCCCuCCAGu -5' |
|||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 25198 | 0.69 | 0.575509 |
Target: 5'- --gGCCGGGUCucGGGUCuGGG-GGUCu -3' miRNA: 3'- cuaCGGCCCGG--UCUAGuCCCuCCAGu -5' |
|||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 22120 | 0.69 | 0.575509 |
Target: 5'- --gGCCGGGUCucGGGUCuGGG-GGUCu -3' miRNA: 3'- cuaCGGCCCGG--UCUAGuCCCuCCAGu -5' |
|||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 19042 | 0.69 | 0.575509 |
Target: 5'- --gGCCGGGUCucGGGUCuGGG-GGUCu -3' miRNA: 3'- cuaCGGCCCGG--UCUAGuCCCuCCAGu -5' |
|||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 59696 | 0.69 | 0.595398 |
Target: 5'- aAUGCCGGuGCCGGA--GGcGGAGGUg- -3' miRNA: 3'- cUACGGCC-CGGUCUagUC-CCUCCAgu -5' |
|||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 12887 | 0.69 | 0.575509 |
Target: 5'- --gGCCGGGUCucGGGUCuGGG-GGUCu -3' miRNA: 3'- cuaCGGCCCGG--UCUAGuCCCuCCAGu -5' |
|||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 125171 | 0.7 | 0.526563 |
Target: 5'- aGAcuCUGGGCCAGGUCAGGGucGUg- -3' miRNA: 3'- -CUacGGCCCGGUCUAGUCCCucCAgu -5' |
|||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 128214 | 0.71 | 0.466387 |
Target: 5'- --cGCCGGGCCAGAcgcucuuucggcgCGGGGAGcUCu -3' miRNA: 3'- cuaCGGCCCGGUCUa------------GUCCCUCcAGu -5' |
|||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 58432 | 0.72 | 0.460925 |
Target: 5'- --cGCCGGGgUGGGUCuGGG-GGUCAc -3' miRNA: 3'- cuaCGGCCCgGUCUAGuCCCuCCAGU- -5' |
|||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 110591 | 0.72 | 0.434137 |
Target: 5'- cGGU-CCGGGUCAGGUCGGuGGGGUCc -3' miRNA: 3'- -CUAcGGCCCGGUCUAGUCcCUCCAGu -5' |
|||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 142348 | 0.72 | 0.460925 |
Target: 5'- --gGCCGGgcagGCCGGGUCuugggccuGGGAGGUCc -3' miRNA: 3'- cuaCGGCC----CGGUCUAGu-------CCCUCCAGu -5' |
|||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 151582 | 0.72 | 0.460925 |
Target: 5'- --gGCCGGgcagGCCGGGUCuugggccuGGGAGGUCc -3' miRNA: 3'- cuaCGGCC----CGGUCUAGu-------CCCUCCAGu -5' |
|||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 148504 | 0.72 | 0.460925 |
Target: 5'- --gGCCGGgcagGCCGGGUCuugggccuGGGAGGUCc -3' miRNA: 3'- cuaCGGCC----CGGUCUAGu-------CCCUCCAGu -5' |
|||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 157737 | 0.72 | 0.460925 |
Target: 5'- --gGCCGGgcagGCCGGGUCuugggccuGGGAGGUCc -3' miRNA: 3'- cuaCGGCC----CGGUCUAGu-------CCCUCCAGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home