miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29133 3' -59.3 NC_006146.1 + 12887 0.69 0.575509
Target:  5'- --gGCCGGGUCucGGGUCuGGG-GGUCu -3'
miRNA:   3'- cuaCGGCCCGG--UCUAGuCCCuCCAGu -5'
29133 3' -59.3 NC_006146.1 + 28276 0.69 0.575509
Target:  5'- --gGCCGGGUCucGGGUCuGGG-GGUCu -3'
miRNA:   3'- cuaCGGCCCGG--UCUAGuCCCuCCAGu -5'
29133 3' -59.3 NC_006146.1 + 169273 0.68 0.645452
Target:  5'- cGggGCCuggcggGGGCCAGcgCGGGGucccggggcgggGGGUCGg -3'
miRNA:   3'- -CuaCGG------CCCGGUCuaGUCCC------------UCCAGU- -5'
29133 3' -59.3 NC_006146.1 + 145744 0.68 0.685354
Target:  5'- --gGCCGGGCaGGAUCu-GGAGGUa- -3'
miRNA:   3'- cuaCGGCCCGgUCUAGucCCUCCAgu -5'
29133 3' -59.3 NC_006146.1 + 60792 0.68 0.635432
Target:  5'- --aGCCGGaCCAGGUcCAGGGccuGGUCc -3'
miRNA:   3'- cuaCGGCCcGGUCUA-GUCCCu--CCAGu -5'
29133 3' -59.3 NC_006146.1 + 54715 0.68 0.655462
Target:  5'- --cGgCGGGcCCGGGUCAGGGcGGcCGa -3'
miRNA:   3'- cuaCgGCCC-GGUCUAGUCCCuCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 168341 0.68 0.645452
Target:  5'- cGggGCCuggcggGGGCCAGcgCGGGGucccggggcgggGGGUCGg -3'
miRNA:   3'- -CuaCGG------CCCGGUCuaGUCCC------------UCCAGU- -5'
29133 3' -59.3 NC_006146.1 + 126246 0.68 0.665455
Target:  5'- -cUGCCGGGCgAGGugaguUCGGcGGGGG-CAa -3'
miRNA:   3'- cuACGGCCCGgUCU-----AGUC-CCUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 170204 0.68 0.645452
Target:  5'- cGggGCCuggcggGGGCCAGcgCGGGGucccggggcgggGGGUCGg -3'
miRNA:   3'- -CuaCGG------CCCGGUCuaGUCCC------------UCCAGU- -5'
29133 3' -59.3 NC_006146.1 + 167409 0.68 0.645452
Target:  5'- cGggGCCuggcggGGGCCAGcgCGGGGucccggggcgggGGGUCGg -3'
miRNA:   3'- -CuaCGG------CCCGGUCuaGUCCC------------UCCAGU- -5'
29133 3' -59.3 NC_006146.1 + 64238 0.68 0.675421
Target:  5'- --cGCCuGGGCCGGggCGGGaGGGG-CGu -3'
miRNA:   3'- cuaCGG-CCCGGUCuaGUCC-CUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 45542 0.68 0.655462
Target:  5'- cGUGaCCaGGGCCAGGcaGGGGAGGg-- -3'
miRNA:   3'- cUAC-GG-CCCGGUCUagUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 117247 0.68 0.685354
Target:  5'- aGcgGCCGGGgC----CAGGGGGGUCGg -3'
miRNA:   3'- -CuaCGGCCCgGucuaGUCCCUCCAGU- -5'
29133 3' -59.3 NC_006146.1 + 49839 0.67 0.734214
Target:  5'- uGUGCCGcaGG-CGGGUCAGG-AGGUCGu -3'
miRNA:   3'- cUACGGC--CCgGUCUAGUCCcUCCAGU- -5'
29133 3' -59.3 NC_006146.1 + 138086 0.67 0.724578
Target:  5'- --cGCCGGGCCGGcUgGGGGuuGUgCAc -3'
miRNA:   3'- cuaCGGCCCGGUCuAgUCCCucCA-GU- -5'
29133 3' -59.3 NC_006146.1 + 60101 0.67 0.731332
Target:  5'- --cGCCGGGCCGGuuggcguUCugugcaaggggccgGGGGAGGg-- -3'
miRNA:   3'- cuaCGGCCCGGUCu------AG--------------UCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 49785 0.67 0.734214
Target:  5'- cGAUGCuCGcGuGCCGGAUguugagguccgaCAGGGAGG-CAa -3'
miRNA:   3'- -CUACG-GC-C-CGGUCUA------------GUCCCUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 148134 0.67 0.743766
Target:  5'- aGUGCCgcauGGGCUucgugcuGGUCAGGGcccGGGUCu -3'
miRNA:   3'- cUACGG----CCCGGu------CUAGUCCC---UCCAGu -5'
29133 3' -59.3 NC_006146.1 + 114209 0.67 0.705084
Target:  5'- --cGCCGGGCCGGA----GGGGGUa- -3'
miRNA:   3'- cuaCGGCCCGGUCUagucCCUCCAgu -5'
29133 3' -59.3 NC_006146.1 + 34256 0.67 0.724578
Target:  5'- --cGCCGGGCCGGcUgGGGGuuGUgCAc -3'
miRNA:   3'- cuaCGGCCCGGUCuAgUCCCucCA-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.