Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 144801 | 0.66 | 0.798807 |
Target: 5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3' miRNA: 3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 145426 | 0.72 | 0.460925 |
Target: 5'- --gGCCGGgcagGCCGGGUCuugggccuGGGAGGUCc -3' miRNA: 3'- cuaCGGCC----CGGUCUAGu-------CCCUCCAGu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 145744 | 0.68 | 0.685354 |
Target: 5'- --gGCCGGGCaGGAUCu-GGAGGUa- -3' miRNA: 3'- cuaCGGCCCGgUCUAGucCCUCCAgu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 147731 | 0.66 | 0.780949 |
Target: 5'- --aGCCGGgGCC---UCGGGGAGGg-- -3' miRNA: 3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 147879 | 0.66 | 0.798807 |
Target: 5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3' miRNA: 3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 148134 | 0.67 | 0.743766 |
Target: 5'- aGUGCCgcauGGGCUucgugcuGGUCAGGGcccGGGUCu -3' miRNA: 3'- cUACGG----CCCGGu------CUAGUCCC---UCCAGu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 148504 | 0.72 | 0.460925 |
Target: 5'- --gGCCGGgcagGCCGGGUCuugggccuGGGAGGUCc -3' miRNA: 3'- cuaCGGCC----CGGUCUAGu-------CCCUCCAGu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 150809 | 0.66 | 0.780949 |
Target: 5'- --aGCCGGgGCC---UCGGGGAGGg-- -3' miRNA: 3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 150957 | 0.66 | 0.798807 |
Target: 5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3' miRNA: 3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 151582 | 0.72 | 0.460925 |
Target: 5'- --gGCCGGgcagGCCGGGUCuugggccuGGGAGGUCc -3' miRNA: 3'- cuaCGGCC----CGGUCUAGu-------CCCUCCAGu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 153887 | 0.66 | 0.780949 |
Target: 5'- --aGCCGGgGCC---UCGGGGAGGg-- -3' miRNA: 3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 154035 | 0.66 | 0.798807 |
Target: 5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3' miRNA: 3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 155088 | 1.08 | 0.001626 |
Target: 5'- cGAUGCCGGGCCAGAUCAGGGAGGUCAg -3' miRNA: 3'- -CUACGGCCCGGUCUAGUCCCUCCAGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 156965 | 0.66 | 0.780949 |
Target: 5'- --aGCCGGgGCC---UCGGGGAGGg-- -3' miRNA: 3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 157113 | 0.66 | 0.798807 |
Target: 5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3' miRNA: 3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 157737 | 0.72 | 0.460925 |
Target: 5'- --gGCCGGgcagGCCGGGUCuugggccuGGGAGGUCc -3' miRNA: 3'- cuaCGGCC----CGGUCUAGu-------CCCUCCAGu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 167303 | 0.66 | 0.780949 |
Target: 5'- aGggGCCGGcGCCug--CAGGGGGGg-- -3' miRNA: 3'- -CuaCGGCC-CGGucuaGUCCCUCCagu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 167409 | 0.68 | 0.645452 |
Target: 5'- cGggGCCuggcggGGGCCAGcgCGGGGucccggggcgggGGGUCGg -3' miRNA: 3'- -CuaCGG------CCCGGUCuaGUCCC------------UCCAGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 167596 | 0.66 | 0.802312 |
Target: 5'- --gGCCGGGCCuccccugggggccucGGGggcggagGGGGGGGUCc -3' miRNA: 3'- cuaCGGCCCGG---------------UCUag-----UCCCUCCAGu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 168235 | 0.66 | 0.780949 |
Target: 5'- aGggGCCGGcGCCug--CAGGGGGGg-- -3' miRNA: 3'- -CuaCGGCC-CGGucuaGUCCCUCCagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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