miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29133 3' -59.3 NC_006146.1 + 148504 0.72 0.460925
Target:  5'- --gGCCGGgcagGCCGGGUCuugggccuGGGAGGUCc -3'
miRNA:   3'- cuaCGGCC----CGGUCUAGu-------CCCUCCAGu -5'
29133 3' -59.3 NC_006146.1 + 148134 0.67 0.743766
Target:  5'- aGUGCCgcauGGGCUucgugcuGGUCAGGGcccGGGUCu -3'
miRNA:   3'- cUACGG----CCCGGu------CUAGUCCC---UCCAGu -5'
29133 3' -59.3 NC_006146.1 + 147879 0.66 0.798807
Target:  5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3'
miRNA:   3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 147731 0.66 0.780949
Target:  5'- --aGCCGGgGCC---UCGGGGAGGg-- -3'
miRNA:   3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 145744 0.68 0.685354
Target:  5'- --gGCCGGGCaGGAUCu-GGAGGUa- -3'
miRNA:   3'- cuaCGGCCCGgUCUAGucCCUCCAgu -5'
29133 3' -59.3 NC_006146.1 + 145426 0.72 0.460925
Target:  5'- --gGCCGGgcagGCCGGGUCuugggccuGGGAGGUCc -3'
miRNA:   3'- cuaCGGCC----CGGUCUAGu-------CCCUCCAGu -5'
29133 3' -59.3 NC_006146.1 + 144801 0.66 0.798807
Target:  5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3'
miRNA:   3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 144654 0.66 0.780949
Target:  5'- --aGCCGGgGCC---UCGGGGAGGg-- -3'
miRNA:   3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 142348 0.72 0.460925
Target:  5'- --gGCCGGgcagGCCGGGUCuugggccuGGGAGGUCc -3'
miRNA:   3'- cuaCGGCC----CGGUCUAGu-------CCCUCCAGu -5'
29133 3' -59.3 NC_006146.1 + 141723 0.66 0.798807
Target:  5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3'
miRNA:   3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 141576 0.66 0.780949
Target:  5'- --aGCCGGgGCC---UCGGGGAGGg-- -3'
miRNA:   3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 138086 0.67 0.724578
Target:  5'- --cGCCGGGCCGGcUgGGGGuuGUgCAc -3'
miRNA:   3'- cuaCGGCCCGGUCuAgUCCCucCA-GU- -5'
29133 3' -59.3 NC_006146.1 + 137884 0.66 0.780949
Target:  5'- ---cCCGGGCCGG--CAGGG-GGUCc -3'
miRNA:   3'- cuacGGCCCGGUCuaGUCCCuCCAGu -5'
29133 3' -59.3 NC_006146.1 + 137206 0.66 0.798807
Target:  5'- --gGCCGGGCaCAcccCGGGGAGGa-- -3'
miRNA:   3'- cuaCGGCCCG-GUcuaGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 137019 0.66 0.798807
Target:  5'- --gGCCGGGCaCAcccCGGGGAGGa-- -3'
miRNA:   3'- cuaCGGCCCG-GUcuaGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 128214 0.71 0.466387
Target:  5'- --cGCCGGGCCAGAcgcucuuucggcgCGGGGAGcUCu -3'
miRNA:   3'- cuaCGGCCCGGUCUa------------GUCCCUCcAGu -5'
29133 3' -59.3 NC_006146.1 + 126246 0.68 0.665455
Target:  5'- -cUGCCGGGCgAGGugaguUCGGcGGGGG-CAa -3'
miRNA:   3'- cuACGGCCCGgUCU-----AGUC-CCUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 125171 0.7 0.526563
Target:  5'- aGAcuCUGGGCCAGGUCAGGGucGUg- -3'
miRNA:   3'- -CUacGGCCCGGUCUAGUCCCucCAgu -5'
29133 3' -59.3 NC_006146.1 + 117247 0.68 0.685354
Target:  5'- aGcgGCCGGGgC----CAGGGGGGUCGg -3'
miRNA:   3'- -CuaCGGCCCgGucuaGUCCCUCCAGU- -5'
29133 3' -59.3 NC_006146.1 + 114209 0.67 0.705084
Target:  5'- --cGCCGGGCCGGA----GGGGGUa- -3'
miRNA:   3'- cuaCGGCCCGGUCUagucCCUCCAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.