Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 110591 | 0.72 | 0.434137 |
Target: 5'- cGGU-CCGGGUCAGGUCGGuGGGGUCc -3' miRNA: 3'- -CUAcGGCCCGGUCUAGUCcCUCCAGu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 106646 | 0.66 | 0.771824 |
Target: 5'- -cUGCUGcGGCCGGcugGUCAGGGccGUCc -3' miRNA: 3'- cuACGGC-CCGGUC---UAGUCCCucCAGu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 64238 | 0.68 | 0.675421 |
Target: 5'- --cGCCuGGGCCGGggCGGGaGGGG-CGu -3' miRNA: 3'- cuaCGG-CCCGGUCuaGUCC-CUCCaGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 61503 | 0.66 | 0.76258 |
Target: 5'- -cUGaCCGacGGCCGuccGAUCAGGGAGGcCu -3' miRNA: 3'- cuAC-GGC--CCGGU---CUAGUCCCUCCaGu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 60792 | 0.68 | 0.635432 |
Target: 5'- --aGCCGGaCCAGGUcCAGGGccuGGUCc -3' miRNA: 3'- cuaCGGCCcGGUCUA-GUCCCu--CCAGu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 60101 | 0.67 | 0.731332 |
Target: 5'- --cGCCGGGCCGGuuggcguUCugugcaaggggccgGGGGAGGg-- -3' miRNA: 3'- cuaCGGCCCGGUCu------AG--------------UCCCUCCagu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 59696 | 0.69 | 0.595398 |
Target: 5'- aAUGCCGGuGCCGGA--GGcGGAGGUg- -3' miRNA: 3'- cUACGGCC-CGGUCUagUC-CCUCCAgu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 58432 | 0.72 | 0.460925 |
Target: 5'- --cGCCGGGgUGGGUCuGGG-GGUCAc -3' miRNA: 3'- cuaCGGCCCgGUCUAGuCCCuCCAGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 55013 | 0.66 | 0.798807 |
Target: 5'- ---cCCGGGCgGGAUgGGGGcgggcgggauggGGGUCGg -3' miRNA: 3'- cuacGGCCCGgUCUAgUCCC------------UCCAGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 54715 | 0.68 | 0.655462 |
Target: 5'- --cGgCGGGcCCGGGUCAGGGcGGcCGa -3' miRNA: 3'- cuaCgGCCC-GGUCUAGUCCCuCCaGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 54042 | 0.73 | 0.372934 |
Target: 5'- --gGCCGGGCCGGAUguGGuGgaggacgagagcguGGGUCAg -3' miRNA: 3'- cuaCGGCCCGGUCUAguCC-C--------------UCCAGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 49839 | 0.67 | 0.734214 |
Target: 5'- uGUGCCGcaGG-CGGGUCAGG-AGGUCGu -3' miRNA: 3'- cUACGGC--CCgGUCUAGUCCcUCCAGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 49785 | 0.67 | 0.734214 |
Target: 5'- cGAUGCuCGcGuGCCGGAUguugagguccgaCAGGGAGG-CAa -3' miRNA: 3'- -CUACG-GC-C-CGGUCUA------------GUCCCUCCaGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 48579 | 0.69 | 0.585438 |
Target: 5'- ---uCCgGGGCCucggGGGUCAGGGAGGcCAg -3' miRNA: 3'- cuacGG-CCCGG----UCUAGUCCCUCCaGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 47715 | 0.73 | 0.391577 |
Target: 5'- uGUGCUcGGCCcucgAGAUUGGGGAGGUCu -3' miRNA: 3'- cUACGGcCCGG----UCUAGUCCCUCCAGu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 46495 | 0.66 | 0.76258 |
Target: 5'- aGGUGCCGGGCUuGAgCccGGAGG-CAc -3' miRNA: 3'- -CUACGGCCCGGuCUaGucCCUCCaGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 45542 | 0.68 | 0.655462 |
Target: 5'- cGUGaCCaGGGCCAGGcaGGGGAGGg-- -3' miRNA: 3'- cUAC-GG-CCCGGUCUagUCCCUCCagu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 44777 | 0.76 | 0.256284 |
Target: 5'- gGGUGCCGuGCCGGGcUCAGGGGGGcgCAg -3' miRNA: 3'- -CUACGGCcCGGUCU-AGUCCCUCCa-GU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 43606 | 0.74 | 0.359547 |
Target: 5'- --gGCCGGGUCGGGUCGGGGgaagAGGg-- -3' miRNA: 3'- cuaCGGCCCGGUCUAGUCCC----UCCagu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 34256 | 0.67 | 0.724578 |
Target: 5'- --cGCCGGGCCGGcUgGGGGuuGUgCAc -3' miRNA: 3'- cuaCGGCCCGGUCuAgUCCCucCA-GU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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