miRNA display CGI


Results 41 - 60 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29133 3' -59.3 NC_006146.1 + 137206 0.66 0.798807
Target:  5'- --gGCCGGGCaCAcccCGGGGAGGa-- -3'
miRNA:   3'- cuaCGGCCCG-GUcuaGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 141723 0.66 0.798807
Target:  5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3'
miRNA:   3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 144801 0.66 0.798807
Target:  5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3'
miRNA:   3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 142348 0.72 0.460925
Target:  5'- --gGCCGGgcagGCCGGGUCuugggccuGGGAGGUCc -3'
miRNA:   3'- cuaCGGCC----CGGUCUAGu-------CCCUCCAGu -5'
29133 3' -59.3 NC_006146.1 + 150957 0.66 0.798807
Target:  5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3'
miRNA:   3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 54042 0.73 0.372934
Target:  5'- --gGCCGGGCCGGAUguGGuGgaggacgagagcguGGGUCAg -3'
miRNA:   3'- cuaCGGCCCGGUCUAguCC-C--------------UCCAGU- -5'
29133 3' -59.3 NC_006146.1 + 147731 0.66 0.780949
Target:  5'- --aGCCGGgGCC---UCGGGGAGGg-- -3'
miRNA:   3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 144654 0.66 0.780949
Target:  5'- --aGCCGGgGCC---UCGGGGAGGg-- -3'
miRNA:   3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 141576 0.66 0.780949
Target:  5'- --aGCCGGgGCC---UCGGGGAGGg-- -3'
miRNA:   3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 148504 0.72 0.460925
Target:  5'- --gGCCGGgcagGCCGGGUCuugggccuGGGAGGUCc -3'
miRNA:   3'- cuaCGGCC----CGGUCUAGu-------CCCUCCAGu -5'
29133 3' -59.3 NC_006146.1 + 125171 0.7 0.526563
Target:  5'- aGAcuCUGGGCCAGGUCAGGGucGUg- -3'
miRNA:   3'- -CUacGGCCCGGUCUAGUCCCucCAgu -5'
29133 3' -59.3 NC_006146.1 + 157737 0.72 0.460925
Target:  5'- --gGCCGGgcagGCCGGGUCuugggccuGGGAGGUCc -3'
miRNA:   3'- cuaCGGCC----CGGUCUAGu-------CCCUCCAGu -5'
29133 3' -59.3 NC_006146.1 + 59696 0.69 0.595398
Target:  5'- aAUGCCGGuGCCGGA--GGcGGAGGUg- -3'
miRNA:   3'- cUACGGCC-CGGUCUagUC-CCUCCAgu -5'
29133 3' -59.3 NC_006146.1 + 60792 0.68 0.635432
Target:  5'- --aGCCGGaCCAGGUcCAGGGccuGGUCc -3'
miRNA:   3'- cuaCGGCCcGGUCUA-GUCCCu--CCAGu -5'
29133 3' -59.3 NC_006146.1 + 45542 0.68 0.655462
Target:  5'- cGUGaCCaGGGCCAGGcaGGGGAGGg-- -3'
miRNA:   3'- cUAC-GG-CCCGGUCUagUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 64238 0.68 0.675421
Target:  5'- --cGCCuGGGCCGGggCGGGaGGGG-CGu -3'
miRNA:   3'- cuaCGG-CCCGGUCuaGUCC-CUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 114209 0.67 0.705084
Target:  5'- --cGCCGGGCCGGA----GGGGGUa- -3'
miRNA:   3'- cuaCGGCCCGGUCUagucCCUCCAgu -5'
29133 3' -59.3 NC_006146.1 + 46495 0.66 0.76258
Target:  5'- aGGUGCCGGGCUuGAgCccGGAGG-CAc -3'
miRNA:   3'- -CUACGGCCCGGuCUaGucCCUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 44777 0.76 0.256284
Target:  5'- gGGUGCCGuGCCGGGcUCAGGGGGGcgCAg -3'
miRNA:   3'- -CUACGGCcCGGUCU-AGUCCCUCCa-GU- -5'
29133 3' -59.3 NC_006146.1 + 106646 0.66 0.771824
Target:  5'- -cUGCUGcGGCCGGcugGUCAGGGccGUCc -3'
miRNA:   3'- cuACGGC-CCGGUC---UAGUCCCucCAGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.