Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29133 | 3' | -59.3 | NC_006146.1 | + | 125171 | 0.7 | 0.526563 |
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Target: 5'- aGAcuCUGGGCCAGGUCAGGGucGUg- -3' miRNA: 3'- -CUacGGCCCGGUCUAGUCCCucCAgu -5' |
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| 29133 | 3' | -59.3 | NC_006146.1 | + | 59696 | 0.69 | 0.595398 |
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Target: 5'- aAUGCCGGuGCCGGA--GGcGGAGGUg- -3' miRNA: 3'- cUACGGCC-CGGUCUagUC-CCUCCAgu -5' |
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| 29133 | 3' | -59.3 | NC_006146.1 | + | 60792 | 0.68 | 0.635432 |
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Target: 5'- --aGCCGGaCCAGGUcCAGGGccuGGUCc -3' miRNA: 3'- cuaCGGCCcGGUCUA-GUCCCu--CCAGu -5' |
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| 29133 | 3' | -59.3 | NC_006146.1 | + | 45542 | 0.68 | 0.655462 |
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Target: 5'- cGUGaCCaGGGCCAGGcaGGGGAGGg-- -3' miRNA: 3'- cUAC-GG-CCCGGUCUagUCCCUCCagu -5' |
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| 29133 | 3' | -59.3 | NC_006146.1 | + | 64238 | 0.68 | 0.675421 |
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Target: 5'- --cGCCuGGGCCGGggCGGGaGGGG-CGu -3' miRNA: 3'- cuaCGG-CCCGGUCuaGUCC-CUCCaGU- -5' |
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| 29133 | 3' | -59.3 | NC_006146.1 | + | 114209 | 0.67 | 0.705084 |
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Target: 5'- --cGCCGGGCCGGA----GGGGGUa- -3' miRNA: 3'- cuaCGGCCCGGUCUagucCCUCCAgu -5' |
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| 29133 | 3' | -59.3 | NC_006146.1 | + | 157113 | 0.66 | 0.798807 |
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Target: 5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3' miRNA: 3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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