miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29133 3' -59.3 NC_006146.1 + 155088 1.08 0.001626
Target:  5'- cGAUGCCGGGCCAGAUCAGGGAGGUCAg -3'
miRNA:   3'- -CUACGGCCCGGUCUAGUCCCUCCAGU- -5'
29133 3' -59.3 NC_006146.1 + 44777 0.76 0.256284
Target:  5'- gGGUGCCGuGCCGGGcUCAGGGGGGcgCAg -3'
miRNA:   3'- -CUACGGCcCGGUCU-AGUCCCUCCa-GU- -5'
29133 3' -59.3 NC_006146.1 + 14816 0.75 0.301145
Target:  5'- --gGCCGGGCCGGAggAGGGcacGGUCu -3'
miRNA:   3'- cuaCGGCCCGGUCUagUCCCu--CCAGu -5'
29133 3' -59.3 NC_006146.1 + 43606 0.74 0.359547
Target:  5'- --gGCCGGGUCGGGUCGGGGgaagAGGg-- -3'
miRNA:   3'- cuaCGGCCCGGUCUAGUCCC----UCCagu -5'
29133 3' -59.3 NC_006146.1 + 54042 0.73 0.372934
Target:  5'- --gGCCGGGCCGGAUguGGuGgaggacgagagcguGGGUCAg -3'
miRNA:   3'- cuaCGGCCCGGUCUAguCC-C--------------UCCAGU- -5'
29133 3' -59.3 NC_006146.1 + 47715 0.73 0.391577
Target:  5'- uGUGCUcGGCCcucgAGAUUGGGGAGGUCu -3'
miRNA:   3'- cUACGGcCCGG----UCUAGUCCCUCCAGu -5'
29133 3' -59.3 NC_006146.1 + 110591 0.72 0.434137
Target:  5'- cGGU-CCGGGUCAGGUCGGuGGGGUCc -3'
miRNA:   3'- -CUAcGGCCCGGUCUAGUCcCUCCAGu -5'
29133 3' -59.3 NC_006146.1 + 142348 0.72 0.460925
Target:  5'- --gGCCGGgcagGCCGGGUCuugggccuGGGAGGUCc -3'
miRNA:   3'- cuaCGGCC----CGGUCUAGu-------CCCUCCAGu -5'
29133 3' -59.3 NC_006146.1 + 58432 0.72 0.460925
Target:  5'- --cGCCGGGgUGGGUCuGGG-GGUCAc -3'
miRNA:   3'- cuaCGGCCCgGUCUAGuCCCuCCAGU- -5'
29133 3' -59.3 NC_006146.1 + 145426 0.72 0.460925
Target:  5'- --gGCCGGgcagGCCGGGUCuugggccuGGGAGGUCc -3'
miRNA:   3'- cuaCGGCC----CGGUCUAGu-------CCCUCCAGu -5'
29133 3' -59.3 NC_006146.1 + 157737 0.72 0.460925
Target:  5'- --gGCCGGgcagGCCGGGUCuugggccuGGGAGGUCc -3'
miRNA:   3'- cuaCGGCC----CGGUCUAGu-------CCCUCCAGu -5'
29133 3' -59.3 NC_006146.1 + 148504 0.72 0.460925
Target:  5'- --gGCCGGgcagGCCGGGUCuugggccuGGGAGGUCc -3'
miRNA:   3'- cuaCGGCC----CGGUCUAGu-------CCCUCCAGu -5'
29133 3' -59.3 NC_006146.1 + 151582 0.72 0.460925
Target:  5'- --gGCCGGgcagGCCGGGUCuugggccuGGGAGGUCc -3'
miRNA:   3'- cuaCGGCC----CGGUCUAGu-------CCCUCCAGu -5'
29133 3' -59.3 NC_006146.1 + 128214 0.71 0.466387
Target:  5'- --cGCCGGGCCAGAcgcucuuucggcgCGGGGAGcUCu -3'
miRNA:   3'- cuaCGGCCCGGUCUa------------GUCCCUCcAGu -5'
29133 3' -59.3 NC_006146.1 + 125171 0.7 0.526563
Target:  5'- aGAcuCUGGGCCAGGUCAGGGucGUg- -3'
miRNA:   3'- -CUacGGCCCGGUCUAGUCCCucCAgu -5'
29133 3' -59.3 NC_006146.1 + 25198 0.69 0.575509
Target:  5'- --gGCCGGGUCucGGGUCuGGG-GGUCu -3'
miRNA:   3'- cuaCGGCCCGG--UCUAGuCCCuCCAGu -5'
29133 3' -59.3 NC_006146.1 + 22120 0.69 0.575509
Target:  5'- --gGCCGGGUCucGGGUCuGGG-GGUCu -3'
miRNA:   3'- cuaCGGCCCGG--UCUAGuCCCuCCAGu -5'
29133 3' -59.3 NC_006146.1 + 19042 0.69 0.575509
Target:  5'- --gGCCGGGUCucGGGUCuGGG-GGUCu -3'
miRNA:   3'- cuaCGGCCCGG--UCUAGuCCCuCCAGu -5'
29133 3' -59.3 NC_006146.1 + 12887 0.69 0.575509
Target:  5'- --gGCCGGGUCucGGGUCuGGG-GGUCu -3'
miRNA:   3'- cuaCGGCCCGG--UCUAGuCCCuCCAGu -5'
29133 3' -59.3 NC_006146.1 + 28276 0.69 0.575509
Target:  5'- --gGCCGGGUCucGGGUCuGGG-GGUCu -3'
miRNA:   3'- cuaCGGCCCGG--UCUAGuCCCuCCAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.