miRNA display CGI


Results 21 - 40 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29133 3' -59.3 NC_006146.1 + 168235 0.66 0.780949
Target:  5'- aGggGCCGGcGCCug--CAGGGGGGg-- -3'
miRNA:   3'- -CuaCGGCC-CGGucuaGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 147731 0.66 0.780949
Target:  5'- --aGCCGGgGCC---UCGGGGAGGg-- -3'
miRNA:   3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 144654 0.66 0.780949
Target:  5'- --aGCCGGgGCC---UCGGGGAGGg-- -3'
miRNA:   3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 106646 0.66 0.771824
Target:  5'- -cUGCUGcGGCCGGcugGUCAGGGccGUCc -3'
miRNA:   3'- cuACGGC-CCGGUC---UAGUCCCucCAGu -5'
29133 3' -59.3 NC_006146.1 + 61503 0.66 0.76258
Target:  5'- -cUGaCCGacGGCCGuccGAUCAGGGAGGcCu -3'
miRNA:   3'- cuAC-GGC--CCGGU---CUAGUCCCUCCaGu -5'
29133 3' -59.3 NC_006146.1 + 46495 0.66 0.76258
Target:  5'- aGGUGCCGGGCUuGAgCccGGAGG-CAc -3'
miRNA:   3'- -CUACGGCCCGGuCUaGucCCUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 31959 0.66 0.753224
Target:  5'- --aGCCaGGGCCAGGUUAGGccaAGaGUCu -3'
miRNA:   3'- cuaCGG-CCCGGUCUAGUCCc--UC-CAGu -5'
29133 3' -59.3 NC_006146.1 + 148134 0.67 0.743766
Target:  5'- aGUGCCgcauGGGCUucgugcuGGUCAGGGcccGGGUCu -3'
miRNA:   3'- cUACGG----CCCGGu------CUAGUCCC---UCCAGu -5'
29133 3' -59.3 NC_006146.1 + 49785 0.67 0.734214
Target:  5'- cGAUGCuCGcGuGCCGGAUguugagguccgaCAGGGAGG-CAa -3'
miRNA:   3'- -CUACG-GC-C-CGGUCUA------------GUCCCUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 49839 0.67 0.734214
Target:  5'- uGUGCCGcaGG-CGGGUCAGG-AGGUCGu -3'
miRNA:   3'- cUACGGC--CCgGUCUAGUCCcUCCAGU- -5'
29133 3' -59.3 NC_006146.1 + 60101 0.67 0.731332
Target:  5'- --cGCCGGGCCGGuuggcguUCugugcaaggggccgGGGGAGGg-- -3'
miRNA:   3'- cuaCGGCCCGGUCu------AG--------------UCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 138086 0.67 0.724578
Target:  5'- --cGCCGGGCCGGcUgGGGGuuGUgCAc -3'
miRNA:   3'- cuaCGGCCCGGUCuAgUCCCucCA-GU- -5'
29133 3' -59.3 NC_006146.1 + 34256 0.67 0.724578
Target:  5'- --cGCCGGGCCGGcUgGGGGuuGUgCAc -3'
miRNA:   3'- cuaCGGCCCGGUCuAgUCCCucCA-GU- -5'
29133 3' -59.3 NC_006146.1 + 114209 0.67 0.705084
Target:  5'- --cGCCGGGCCGGA----GGGGGUa- -3'
miRNA:   3'- cuaCGGCCCGGUCUagucCCUCCAgu -5'
29133 3' -59.3 NC_006146.1 + 145744 0.68 0.685354
Target:  5'- --gGCCGGGCaGGAUCu-GGAGGUa- -3'
miRNA:   3'- cuaCGGCCCGgUCUAGucCCUCCAgu -5'
29133 3' -59.3 NC_006146.1 + 117247 0.68 0.685354
Target:  5'- aGcgGCCGGGgC----CAGGGGGGUCGg -3'
miRNA:   3'- -CuaCGGCCCgGucuaGUCCCUCCAGU- -5'
29133 3' -59.3 NC_006146.1 + 64238 0.68 0.675421
Target:  5'- --cGCCuGGGCCGGggCGGGaGGGG-CGu -3'
miRNA:   3'- cuaCGG-CCCGGUCuaGUCC-CUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 126246 0.68 0.665455
Target:  5'- -cUGCCGGGCgAGGugaguUCGGcGGGGG-CAa -3'
miRNA:   3'- cuACGGCCCGgUCU-----AGUC-CCUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 54715 0.68 0.655462
Target:  5'- --cGgCGGGcCCGGGUCAGGGcGGcCGa -3'
miRNA:   3'- cuaCgGCCC-GGUCUAGUCCCuCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 45542 0.68 0.655462
Target:  5'- cGUGaCCaGGGCCAGGcaGGGGAGGg-- -3'
miRNA:   3'- cUAC-GG-CCCGGUCUagUCCCUCCagu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.