miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29133 5' -61.6 NC_006146.1 + 56922 0.67 0.659928
Target:  5'- aGCGucacuauuuaauuuGGGUCCCCGCcuGGCcacgGCAGCAu -3'
miRNA:   3'- cCGU--------------UCCAGGGGCG--CCGcag-CGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 15554 0.67 0.657002
Target:  5'- aGGCGggccuucgucucGGGUCCCUGggaggacaggcgcguCGGCGagggCGCGGCc -3'
miRNA:   3'- -CCGU------------UCCAGGGGC---------------GCCGCa---GCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 73411 0.67 0.653099
Target:  5'- aGGUcgcggauguuGAGGUCCCCcCgGGCGUUGUAGa- -3'
miRNA:   3'- -CCG----------UUCCAGGGGcG-CCGCAGCGUCgu -5'
29133 5' -61.6 NC_006146.1 + 94722 0.67 0.653099
Target:  5'- gGGUcuucauGAGGUgCCCGaacuGGaCGUCGguGCAg -3'
miRNA:   3'- -CCG------UUCCAgGGGCg---CC-GCAGCguCGU- -5'
29133 5' -61.6 NC_006146.1 + 80268 0.67 0.637468
Target:  5'- cGGCucAGGucuggacacccuaccUCCCCGgGGCGagGgAGCAa -3'
miRNA:   3'- -CCGu-UCC---------------AGGGGCgCCGCagCgUCGU- -5'
29133 5' -61.6 NC_006146.1 + 115346 0.67 0.633557
Target:  5'- cGGUcaucGAGGccuUCCUgGcCGGCGUgGCGGCGg -3'
miRNA:   3'- -CCG----UUCC---AGGGgC-GCCGCAgCGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 108788 0.67 0.633557
Target:  5'- uGGC-AGGUCuCCCGCcgaGGCGa-GCAGUc -3'
miRNA:   3'- -CCGuUCCAG-GGGCG---CCGCagCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 170224 0.67 0.623781
Target:  5'- cGCGGGGUCCCggggCGgGGgGUCG-GGCGg -3'
miRNA:   3'- cCGUUCCAGGG----GCgCCgCAGCgUCGU- -5'
29133 5' -61.6 NC_006146.1 + 55275 0.67 0.623781
Target:  5'- cGGCucguGGGg-CUCGCGGUGg-GCAGCAg -3'
miRNA:   3'- -CCGu---UCCagGGGCGCCGCagCGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 167429 0.67 0.623781
Target:  5'- cGCGGGGUCCCggggCGgGGgGUCG-GGCGg -3'
miRNA:   3'- cCGUUCCAGGG----GCgCCgCAGCgUCGU- -5'
29133 5' -61.6 NC_006146.1 + 168361 0.67 0.623781
Target:  5'- cGCGGGGUCCCggggCGgGGgGUCG-GGCGg -3'
miRNA:   3'- cCGUUCCAGGG----GCgCCgCAGCgUCGU- -5'
29133 5' -61.6 NC_006146.1 + 169293 0.67 0.623781
Target:  5'- cGCGGGGUCCCggggCGgGGgGUCG-GGCGg -3'
miRNA:   3'- cCGUUCCAGGG----GCgCCgCAGCgUCGU- -5'
29133 5' -61.6 NC_006146.1 + 146446 0.67 0.61401
Target:  5'- gGGCGAgugggcGGUCCacacaCGCGG-G-CGCAGCAc -3'
miRNA:   3'- -CCGUU------CCAGGg----GCGCCgCaGCGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 107399 0.67 0.61401
Target:  5'- aGCAGGGUCCagggCUGCGGCGU-GCA-CGg -3'
miRNA:   3'- cCGUUCCAGG----GGCGCCGCAgCGUcGU- -5'
29133 5' -61.6 NC_006146.1 + 49476 0.68 0.604252
Target:  5'- uGGUGAGGg--CCGCGGUGUCggccagggGCGGCGu -3'
miRNA:   3'- -CCGUUCCaggGGCGCCGCAG--------CGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 95195 0.68 0.604252
Target:  5'- uGGCcAGGUCCCUGCG-C--UGCAGCu -3'
miRNA:   3'- -CCGuUCCAGGGGCGCcGcaGCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 115954 0.68 0.604252
Target:  5'- cGGCGGcGGUcgCCCCGCGGgcagaCGUCGaGGCc -3'
miRNA:   3'- -CCGUU-CCA--GGGGCGCC-----GCAGCgUCGu -5'
29133 5' -61.6 NC_006146.1 + 114304 0.68 0.594513
Target:  5'- cGGCGAGGagaCCgGCGGCGggCuCGGCGc -3'
miRNA:   3'- -CCGUUCCag-GGgCGCCGCa-GcGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 60337 0.68 0.594513
Target:  5'- uGGCGAGuGUCUacuCUGCGGUGg-GCAGCc -3'
miRNA:   3'- -CCGUUC-CAGG---GGCGCCGCagCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 94030 0.68 0.575117
Target:  5'- cGGCAGGGgcacggCCCCGa-GCGcCGCcGCGu -3'
miRNA:   3'- -CCGUUCCa-----GGGGCgcCGCaGCGuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.