Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29134 | 3' | -48.7 | NC_006146.1 | + | 90058 | 0.66 | 0.998776 |
Target: 5'- gGUGCUggaGGGAgcCUaGGAGGCgGUGCa -3' miRNA: 3'- -CAUGAa--CCUUaaGAgUUUCCGgCGCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 98313 | 0.66 | 0.998776 |
Target: 5'- cGUGCUccgUGGccgUCUgGcacGGGGCCGgGCg -3' miRNA: 3'- -CAUGA---ACCuuaAGAgU---UUCCGGCgCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 51971 | 0.66 | 0.998776 |
Target: 5'- -gACggGGAggUCUCcggcaugcGGGCCGgGCg -3' miRNA: 3'- caUGaaCCUuaAGAGuu------UCCGGCgCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 152144 | 0.66 | 0.998776 |
Target: 5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3' miRNA: 3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 149066 | 0.66 | 0.998776 |
Target: 5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3' miRNA: 3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 145988 | 0.66 | 0.998776 |
Target: 5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3' miRNA: 3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 142910 | 0.66 | 0.998776 |
Target: 5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3' miRNA: 3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 155222 | 0.66 | 0.998776 |
Target: 5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3' miRNA: 3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 152220 | 0.66 | 0.998728 |
Target: 5'- gGUAUcUGGAucgugauagcgUCgccugCGAAGGCCGgGCa -3' miRNA: 3'- -CAUGaACCUua---------AGa----GUUUCCGGCgCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 44221 | 0.67 | 0.99821 |
Target: 5'- gGUGcCUUGGugaccgUCUCcucuGGCCGgGCg -3' miRNA: 3'- -CAU-GAACCuua---AGAGuuu-CCGGCgCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 3726 | 0.67 | 0.997853 |
Target: 5'- -----aGGG--UCUCuGGGGGCCGCGUg -3' miRNA: 3'- caugaaCCUuaAGAG-UUUCCGGCGCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 49455 | 0.67 | 0.996957 |
Target: 5'- uGUACUUcuccaugaccGGGAUgg-UGAGGGCCGCGg -3' miRNA: 3'- -CAUGAA----------CCUUAagaGUUUCCGGCGCg -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 157984 | 0.67 | 0.996957 |
Target: 5'- -gGCggUGGAcuugaugaagcuGUUCUgGAGGGCgGCGUu -3' miRNA: 3'- caUGa-ACCU------------UAAGAgUUUCCGgCGCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 159366 | 0.67 | 0.996905 |
Target: 5'- -gGCggGGGcgUagcugaccgccagCUCGcAGGCCGCGCu -3' miRNA: 3'- caUGaaCCUuaA-------------GAGUuUCCGGCGCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 109289 | 0.68 | 0.995772 |
Target: 5'- -aGCUgGGAGggaUCUCGGccccGGCCGCGg -3' miRNA: 3'- caUGAaCCUUa--AGAGUUu---CCGGCGCg -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 55455 | 0.68 | 0.995052 |
Target: 5'- aGUACcgUGGccacccgCUCGAuGGCCGCGg -3' miRNA: 3'- -CAUGa-ACCuuaa---GAGUUuCCGGCGCg -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 98991 | 0.68 | 0.995052 |
Target: 5'- -----aGGcccaggUCAGAGGCCGCGCg -3' miRNA: 3'- caugaaCCuuaag-AGUUUCCGGCGCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 155699 | 0.68 | 0.995052 |
Target: 5'- gGUACUgcGggUUCgaggUGAAggcGGCCGCGCa -3' miRNA: 3'- -CAUGAacCuuAAGa---GUUU---CCGGCGCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 69973 | 0.68 | 0.994235 |
Target: 5'- -aGCUUGucAUUCUgGAAGGCguaGCGUa -3' miRNA: 3'- caUGAACcuUAAGAgUUUCCGg--CGCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 35503 | 0.69 | 0.98982 |
Target: 5'- -aGCcUGGggUUC-----GGCCGCGCg -3' miRNA: 3'- caUGaACCuuAAGaguuuCCGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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