miRNA display CGI


Results 21 - 40 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29135 3' -55.3 NC_006146.1 + 144701 0.66 0.94491
Target:  5'- gCCUGGaggcgAGACuGGGCGGcugcgGGGGACGc -3'
miRNA:   3'- gGGACCg----UUUGuCCCGUC-----UCUCUGCc -5'
29135 3' -55.3 NC_006146.1 + 53864 0.66 0.944469
Target:  5'- gCCCUGuGCAucAACaccuacuGGGaGCGGcGGGGCGGc -3'
miRNA:   3'- -GGGAC-CGU--UUG-------UCC-CGUCuCUCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 15039 0.66 0.942232
Target:  5'- gCCUGGC---CAGGGCccgccgggccugcgaGGAGGcacuGGCGGg -3'
miRNA:   3'- gGGACCGuuuGUCCCG---------------UCUCU----CUGCC- -5'
29135 3' -55.3 NC_006146.1 + 105786 0.66 0.940401
Target:  5'- aCCagGGCAccCAGGGCucccAGACGGg -3'
miRNA:   3'- gGGa-CCGUuuGUCCCGucucUCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 147772 0.66 0.940401
Target:  5'- gCCCUugccuggaGGCAgaGACuGGGCGGcugcgGGGGACGc -3'
miRNA:   3'- -GGGA--------CCGU--UUGuCCCGUC-----UCUCUGCc -5'
29135 3' -55.3 NC_006146.1 + 141617 0.66 0.940401
Target:  5'- gCCCUugccuggaGGCAgaGACuGGGCGGcugcgGGGGACGc -3'
miRNA:   3'- -GGGA--------CCGU--UUGuCCCGUC-----UCUCUGCc -5'
29135 3' -55.3 NC_006146.1 + 150850 0.66 0.940401
Target:  5'- gCCCUugccuggaGGCAgaGACuGGGCGGcugcgGGGGACGc -3'
miRNA:   3'- -GGGA--------CCGU--UUGuCCCGUC-----UCUCUGCc -5'
29135 3' -55.3 NC_006146.1 + 140513 0.66 0.940401
Target:  5'- aCCUGGCGGcccuACAGcaaaccuaGCccugGGAGGGACGGc -3'
miRNA:   3'- gGGACCGUU----UGUCc-------CG----UCUCUCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 153928 0.66 0.940401
Target:  5'- gCCCUugccuggaGGCAgaGACuGGGCGGcugcgGGGGACGc -3'
miRNA:   3'- -GGGA--------CCGU--UUGuCCCGUC-----UCUCUGCc -5'
29135 3' -55.3 NC_006146.1 + 100269 0.66 0.940401
Target:  5'- gCUCUGGUG---GGGGCAauGGGGCGGa -3'
miRNA:   3'- -GGGACCGUuugUCCCGUcuCUCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 157006 0.66 0.940401
Target:  5'- gCCCUugccuggaGGCAgaGACuGGGCGGcugcgGGGGACGc -3'
miRNA:   3'- -GGGA--------CCGU--UUGuCCCGUC-----UCUCUGCc -5'
29135 3' -55.3 NC_006146.1 + 95079 0.66 0.9404
Target:  5'- cCCCUGGUgcaugucccGCAGGGCcucGA-AGGCGGc -3'
miRNA:   3'- -GGGACCGuu-------UGUCCCGu--CUcUCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 40997 0.66 0.9404
Target:  5'- gCCCUGuCugguCAGGGCGaAGAGcCGGg -3'
miRNA:   3'- -GGGACcGuuu-GUCCCGUcUCUCuGCC- -5'
29135 3' -55.3 NC_006146.1 + 75701 0.66 0.9404
Target:  5'- cUCUUGGCAGACcaccccGGGguGAG-GACa- -3'
miRNA:   3'- -GGGACCGUUUGu-----CCCguCUCuCUGcc -5'
29135 3' -55.3 NC_006146.1 + 52955 0.66 0.9404
Target:  5'- uCCCguuaccguucaUGGCccuccGCGGGGCGGGGcGGGCGu -3'
miRNA:   3'- -GGG-----------ACCGuu---UGUCCCGUCUC-UCUGCc -5'
29135 3' -55.3 NC_006146.1 + 159291 0.66 0.939937
Target:  5'- gCCCUcgcagucGGCAAACAGGGgcCAG-GAGuCGu -3'
miRNA:   3'- -GGGA-------CCGUUUGUCCC--GUCuCUCuGCc -5'
29135 3' -55.3 NC_006146.1 + 28764 0.66 0.93566
Target:  5'- gCCCUcggGGCc--CAGGGCcccuaguccAGAG-GACGGa -3'
miRNA:   3'- -GGGA---CCGuuuGUCCCG---------UCUCuCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 53339 0.66 0.93566
Target:  5'- gCCC-GGCGGccGCGGGGCGGcguGAGGucuUGGc -3'
miRNA:   3'- -GGGaCCGUU--UGUCCCGUCu--CUCU---GCC- -5'
29135 3' -55.3 NC_006146.1 + 26736 0.66 0.93566
Target:  5'- gCCgGGCAggUugGGGGUuaAGAGugGGu -3'
miRNA:   3'- gGGaCCGUuuG--UCCCGucUCUCugCC- -5'
29135 3' -55.3 NC_006146.1 + 121201 0.66 0.93566
Target:  5'- uCCgUGGCcccuGGAgAGGGUGGAGgaGGACGa -3'
miRNA:   3'- -GGgACCG----UUUgUCCCGUCUC--UCUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.