miRNA display CGI


Results 21 - 40 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29136 3' -65.8 NC_006146.1 + 144846 0.66 0.500897
Target:  5'- aGGCGGCUCucccgGGCUgCCGGGGUCCc- -3'
miRNA:   3'- -UCGCCGGGucg--UCGA-GGUCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 147924 0.66 0.500897
Target:  5'- aGGCGGCUCucccgGGCUgCCGGGGUCCc- -3'
miRNA:   3'- -UCGCCGGGucg--UCGA-GGUCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 151002 0.66 0.500897
Target:  5'- aGGCGGCUCucccgGGCUgCCGGGGUCCc- -3'
miRNA:   3'- -UCGCCGGGucg--UCGA-GGUCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 154080 0.66 0.500897
Target:  5'- aGGCGGCUCucccgGGCUgCCGGGGUCCc- -3'
miRNA:   3'- -UCGCCGGGucg--UCGA-GGUCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 149810 0.66 0.499995
Target:  5'- uGGgGGCCacaaacaGGCuccggguggugugGGCggCCAGGGCCuCGGc -3'
miRNA:   3'- -UCgCCGGg------UCG-------------UCGa-GGUCCCGG-GCC- -5'
29136 3' -65.8 NC_006146.1 + 136739 0.66 0.495494
Target:  5'- uGGgGGCgCAccccccacccucgccGgGGCUCCGGgaGGCCCGGc -3'
miRNA:   3'- -UCgCCGgGU---------------CgUCGAGGUC--CCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 128830 0.66 0.491907
Target:  5'- cGCGGUCCAGgAGC---AGGuaaGCCCGGc -3'
miRNA:   3'- uCGCCGGGUCgUCGaggUCC---CGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 60508 0.66 0.491907
Target:  5'- cGaCGGCgaGGguGCUCCcacuGGGCCCa- -3'
miRNA:   3'- uC-GCCGggUCguCGAGGu---CCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 53342 0.66 0.491907
Target:  5'- cGGCGGCCgCggGGCGGCgugaggUCUuggcuGGCCCGGc -3'
miRNA:   3'- -UCGCCGG-G--UCGUCG------AGGuc---CCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 145200 0.66 0.491907
Target:  5'- gGGCuGGCCCGGCuuccaCUCCugAGGGUagacguagaagaCCGGg -3'
miRNA:   3'- -UCG-CCGGGUCGuc---GAGG--UCCCG------------GGCC- -5'
29136 3' -65.8 NC_006146.1 + 129350 0.66 0.491907
Target:  5'- gAGCGGCCgguucucgAGCAGCcUCAGGaggaGCCCGcGg -3'
miRNA:   3'- -UCGCCGGg-------UCGUCGaGGUCC----CGGGC-C- -5'
29136 3' -65.8 NC_006146.1 + 127951 0.66 0.491907
Target:  5'- cAGCGuGCCCggGGCGGagggCAGGGaCCGGg -3'
miRNA:   3'- -UCGC-CGGG--UCGUCgag-GUCCCgGGCC- -5'
29136 3' -65.8 NC_006146.1 + 46578 0.66 0.491907
Target:  5'- uGGCGuGCgCCAGCAGCgUCAuGGCCaCGa -3'
miRNA:   3'- -UCGC-CG-GGUCGUCGaGGUcCCGG-GCc -5'
29136 3' -65.8 NC_006146.1 + 33406 0.66 0.486548
Target:  5'- gGGUGGCCCgccugGGCAccGCugcgccgccgcucggUCCuGGGGCuCCGGg -3'
miRNA:   3'- -UCGCCGGG-----UCGU--CG---------------AGG-UCCCG-GGCC- -5'
29136 3' -65.8 NC_006146.1 + 169553 0.66 0.482992
Target:  5'- gAGgGGCgagCgGGgGGCUuccCCGGGGCCCGa -3'
miRNA:   3'- -UCgCCG---GgUCgUCGA---GGUCCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 126795 0.66 0.482992
Target:  5'- ---cGCCgGGCAGC--CGGGGCCUGGa -3'
miRNA:   3'- ucgcCGGgUCGUCGagGUCCCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 168621 0.66 0.482992
Target:  5'- gAGgGGCgagCgGGgGGCUuccCCGGGGCCCGa -3'
miRNA:   3'- -UCgCCG---GgUCgUCGA---GGUCCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 167688 0.66 0.482992
Target:  5'- gAGgGGCgagCgGGgGGCUuccCCGGGGCCCGa -3'
miRNA:   3'- -UCgCCG---GgUCgUCGA---GGUCCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 39669 0.66 0.482104
Target:  5'- -uUGGCCUuggaggcGGCgGGCUCCuGGGCCUGc -3'
miRNA:   3'- ucGCCGGG-------UCG-UCGAGGuCCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 132222 0.66 0.474155
Target:  5'- --aGGCCUuuaaGGCAGCUCUcGcGGCCgGGc -3'
miRNA:   3'- ucgCCGGG----UCGUCGAGGuC-CCGGgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.