miRNA display CGI


Results 21 - 40 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 13440 0.68 0.43893
Target:  5'- cAGGCCaGCCGgagggaccCCGGCAGCCCgGGu--- -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgCUguag -5'
29137 3' -64.1 NC_006146.1 + 13728 0.68 0.42196
Target:  5'- cAGGCCgGCCGgagggaccCCGGCAGCCCgGGa--- -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgCUguag -5'
29137 3' -64.1 NC_006146.1 + 13842 0.69 0.36505
Target:  5'- cAGGCCgGCCGgagggaccCCGGCGGCCCgGugugccaGCGUCc -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgC-------UGUAG- -5'
29137 3' -64.1 NC_006146.1 + 14120 0.67 0.501197
Target:  5'- gGGGCUGCUGgCGGCGGCCU--ACAg- -3'
miRNA:   3'- -UCCGGCGGCgGUCGUCGGGgcUGUag -5'
29137 3' -64.1 NC_006146.1 + 15317 0.67 0.510416
Target:  5'- gAGGCCaGCC-CCGGUGuGCCCCuGGCGg- -3'
miRNA:   3'- -UCCGG-CGGcGGUCGU-CGGGG-CUGUag -5'
29137 3' -64.1 NC_006146.1 + 16147 0.7 0.315037
Target:  5'- aAGGCgGCCGCCcuCAGUCCCccaGACAg- -3'
miRNA:   3'- -UCCGgCGGCGGucGUCGGGG---CUGUag -5'
29137 3' -64.1 NC_006146.1 + 16518 0.68 0.43893
Target:  5'- cAGGCCaGCCGgagggaccCCGGCAGCCCgGGu--- -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgCUguag -5'
29137 3' -64.1 NC_006146.1 + 16806 0.68 0.42196
Target:  5'- cAGGCCgGCCGgagggaccCCGGCAGCCCgGGa--- -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgCUguag -5'
29137 3' -64.1 NC_006146.1 + 16920 0.69 0.36505
Target:  5'- cAGGCCgGCCGgagggaccCCGGCGGCCCgGugugccaGCGUCc -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgC-------UGUAG- -5'
29137 3' -64.1 NC_006146.1 + 18951 0.67 0.465096
Target:  5'- aGGGCaUGUggugCGCCAGCGGCCCCuagagagggcGGCAg- -3'
miRNA:   3'- -UCCG-GCG----GCGGUCGUCGGGG----------CUGUag -5'
29137 3' -64.1 NC_006146.1 + 19225 0.7 0.315037
Target:  5'- aAGGCgGCCGCCcuCAGUCCCccaGACAg- -3'
miRNA:   3'- -UCCGgCGGCGGucGUCGGGG---CUGUag -5'
29137 3' -64.1 NC_006146.1 + 19596 0.68 0.43893
Target:  5'- cAGGCCaGCCGgagggaccCCGGCAGCCCgGGu--- -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgCUguag -5'
29137 3' -64.1 NC_006146.1 + 19884 0.68 0.42196
Target:  5'- cAGGCCgGCCGgagggaccCCGGCAGCCCgGGa--- -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgCUguag -5'
29137 3' -64.1 NC_006146.1 + 19997 0.69 0.36505
Target:  5'- cAGGCCgGCCGgagggaccCCGGCGGCCCgGugugccaGCGUCc -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgC-------UGUAG- -5'
29137 3' -64.1 NC_006146.1 + 21251 0.66 0.52906
Target:  5'- cAGGCgCGCUGCCGGCGcGUgCUCGACc-- -3'
miRNA:   3'- -UCCG-GCGGCGGUCGU-CG-GGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 21355 0.68 0.447559
Target:  5'- gGGGCUGCCgGCgGGCuuccuGCCggucaUCGACAUCc -3'
miRNA:   3'- -UCCGGCGG-CGgUCGu----CGG-----GGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 22303 0.7 0.315037
Target:  5'- aAGGCgGCCGCCcuCAGUCCCccaGACAg- -3'
miRNA:   3'- -UCCGgCGGCGGucGUCGGGG---CUGUag -5'
29137 3' -64.1 NC_006146.1 + 22674 0.68 0.43893
Target:  5'- cAGGCCaGCCGgagggaccCCGGCAGCCCgGGu--- -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgCUguag -5'
29137 3' -64.1 NC_006146.1 + 22961 0.68 0.42196
Target:  5'- cAGGCCgGCCGgagggaccCCGGCAGCCCgGGa--- -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgCUguag -5'
29137 3' -64.1 NC_006146.1 + 23075 0.69 0.36505
Target:  5'- cAGGCCgGCCGgagggaccCCGGCGGCCCgGugugccaGCGUCc -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgC-------UGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.