miRNA display CGI


Results 21 - 40 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 155838 0.66 0.547949
Target:  5'- cGGaGCCcCCGCCAgugccuccucGCAGgCCCGGCGg- -3'
miRNA:   3'- -UC-CGGcGGCGGU----------CGUCgGGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 155719 0.73 0.21438
Target:  5'- aAGGCgGCCGCgCAGuCGGCCUucagcgcuuccaCGGCGUCg -3'
miRNA:   3'- -UCCGgCGGCG-GUC-GUCGGG------------GCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 155184 0.67 0.492051
Target:  5'- gAGGaaacaGCCcccucuccucgGCCAGUGGCCCCGugAUg -3'
miRNA:   3'- -UCCgg---CGG-----------CGGUCGUCGGGGCugUAg -5'
29137 3' -64.1 NC_006146.1 + 154766 0.69 0.389238
Target:  5'- aGGGCgGCCGCCuuGgGGCCCgGA-GUCu -3'
miRNA:   3'- -UCCGgCGGCGGu-CgUCGGGgCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 154720 0.68 0.413625
Target:  5'- gAGGCCGgaccCCGCCuGGCGaCCCUGGgGUCu -3'
miRNA:   3'- -UCCGGC----GGCGG-UCGUcGGGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 154654 0.71 0.294964
Target:  5'- -cGCUGCCGCCGGCuGCaCCGugGUg -3'
miRNA:   3'- ucCGGCGGCGGUCGuCGgGGCugUAg -5'
29137 3' -64.1 NC_006146.1 + 154604 0.7 0.350746
Target:  5'- gGGGCagaGCCaGCCAGCGGCugaaCCCGAgGa- -3'
miRNA:   3'- -UCCGg--CGG-CGGUCGUCG----GGGCUgUag -5'
29137 3' -64.1 NC_006146.1 + 153947 0.66 0.52906
Target:  5'- aAGGcCCGCCGCUccccguugGGCAcgguGCCUCGAUuGUCg -3'
miRNA:   3'- -UCC-GGCGGCGG--------UCGU----CGGGGCUG-UAG- -5'
29137 3' -64.1 NC_006146.1 + 152037 0.71 0.281515
Target:  5'- gAGGCCcCCGCacguccaccacccCGGCAGCgCCCGGgGUCu -3'
miRNA:   3'- -UCCGGcGGCG-------------GUCGUCG-GGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 151643 0.68 0.413625
Target:  5'- gAGGCCGgaccCCGCCuGGCGaCCCUGGgGUCu -3'
miRNA:   3'- -UCCGGC----GGCGG-UCGUcGGGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 151526 0.7 0.350746
Target:  5'- gGGGCagaGCCaGCCAGCGGCugaaCCCGAgGa- -3'
miRNA:   3'- -UCCGg--CGG-CGGUCGUCG----GGGCUgUag -5'
29137 3' -64.1 NC_006146.1 + 149630 0.67 0.500279
Target:  5'- cGGgCGuCCGCCAGCAccaggucgagcacGCgCCGGCAg- -3'
miRNA:   3'- uCCgGC-GGCGGUCGU-------------CGgGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 149551 0.71 0.282144
Target:  5'- cAGGaaGcCCGCCGGCAGCCCCucCGa- -3'
miRNA:   3'- -UCCggC-GGCGGUCGUCGGGGcuGUag -5'
29137 3' -64.1 NC_006146.1 + 148611 0.69 0.389238
Target:  5'- aGGGCgGCCGCCuuGgGGCCCgGA-GUCu -3'
miRNA:   3'- -UCCGgCGGCGGu-CgUCGGGgCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 148565 0.68 0.413625
Target:  5'- gAGGCCGgaccCCGCCuGGCGaCCCUGGgGUCu -3'
miRNA:   3'- -UCCGGC----GGCGG-UCGUcGGGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 148448 0.7 0.350746
Target:  5'- gGGGCagaGCCaGCCAGCGGCugaaCCCGAgGa- -3'
miRNA:   3'- -UCCGg--CGG-CGGUCGUCG----GGGCUgUag -5'
29137 3' -64.1 NC_006146.1 + 147368 0.74 0.173156
Target:  5'- cGGCgGCCGCCAGacacgggAGUCCCGAguUCa -3'
miRNA:   3'- uCCGgCGGCGGUCg------UCGGGGCUguAG- -5'
29137 3' -64.1 NC_006146.1 + 147138 0.7 0.321257
Target:  5'- cAGGCCGCCauucucgGCCgcGGCAGUugaCCCGGCGg- -3'
miRNA:   3'- -UCCGGCGG-------CGG--UCGUCG---GGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 146829 0.72 0.263748
Target:  5'- gAGGCCG-CGCCAGCguagAGCCCgGGCc-- -3'
miRNA:   3'- -UCCGGCgGCGGUCG----UCGGGgCUGuag -5'
29137 3' -64.1 NC_006146.1 + 146790 0.69 0.365814
Target:  5'- cAGGcCCGgUGCCAGCcGCCCuCGACccgcGUCc -3'
miRNA:   3'- -UCC-GGCgGCGGUCGuCGGG-GCUG----UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.