miRNA display CGI


Results 21 - 40 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 156786 1.07 0.000733
Target:  5'- uAGGCCGCCGCCAGCAGCCCCGACAUCc -3'
miRNA:   3'- -UCCGGCGGCGGUCGUCGGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 169217 0.71 0.301542
Target:  5'- cGGCUGCaCGCgCGGCGGCgCCGGCc-- -3'
miRNA:   3'- uCCGGCG-GCG-GUCGUCGgGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 168285 0.71 0.301542
Target:  5'- cGGCUGCaCGCgCGGCGGCgCCGGCc-- -3'
miRNA:   3'- uCCGGCG-GCG-GUCGUCGgGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 78585 0.71 0.287858
Target:  5'- cAGGCCGggcCCGCCccccagcAGCAGCCCCaGGCc-- -3'
miRNA:   3'- -UCCGGC---GGCGG-------UCGUCGGGG-CUGuag -5'
29137 3' -64.1 NC_006146.1 + 146829 0.72 0.263748
Target:  5'- gAGGCCG-CGCCAGCguagAGCCCgGGCc-- -3'
miRNA:   3'- -UCCGGCgGCGGUCG----UCGGGgCUGuag -5'
29137 3' -64.1 NC_006146.1 + 13069 0.7 0.315037
Target:  5'- aAGGCgGCCGCCcuCAGUCCCccaGACAg- -3'
miRNA:   3'- -UCCGgCGGCGGucGUCGGGG---CUGUag -5'
29137 3' -64.1 NC_006146.1 + 48255 0.71 0.301542
Target:  5'- aGGGCCcccGCCGCCguccuGGCgcgaaagagGGCCCCGGCcUCc -3'
miRNA:   3'- -UCCGG---CGGCGG-----UCG---------UCGGGGCUGuAG- -5'
29137 3' -64.1 NC_006146.1 + 155719 0.73 0.21438
Target:  5'- aAGGCgGCCGCgCAGuCGGCCUucagcgcuuccaCGGCGUCg -3'
miRNA:   3'- -UCCGgCGGCG-GUC-GUCGGG------------GCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 55244 0.71 0.288498
Target:  5'- cAGGUaCGUCGCCcgGGCGGCCCgGGCGa- -3'
miRNA:   3'- -UCCG-GCGGCGG--UCGUCGGGgCUGUag -5'
29137 3' -64.1 NC_006146.1 + 78735 0.71 0.287858
Target:  5'- cAGGCCGggcCCGCCccccagcAGCAGCCCCaGGCc-- -3'
miRNA:   3'- -UCCGGC---GGCGG-------UCGUCGGGG-CUGuag -5'
29137 3' -64.1 NC_006146.1 + 78830 0.74 0.190529
Target:  5'- cGGGCCGCCcCCcgcAGCAGCCCCaGGCc-- -3'
miRNA:   3'- -UCCGGCGGcGG---UCGUCGGGG-CUGuag -5'
29137 3' -64.1 NC_006146.1 + 49918 0.74 0.181659
Target:  5'- gAGGCCGCCgagGCCAcuCGGUCCCgGACGUCc -3'
miRNA:   3'- -UCCGGCGG---CGGUc-GUCGGGG-CUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 22303 0.7 0.315037
Target:  5'- aAGGCgGCCGCCcuCAGUCCCccaGACAg- -3'
miRNA:   3'- -UCCGgCGGCGGucGUCGGGG---CUGUag -5'
29137 3' -64.1 NC_006146.1 + 16147 0.7 0.315037
Target:  5'- aAGGCgGCCGCCcuCAGUCCCccaGACAg- -3'
miRNA:   3'- -UCCGgCGGCGGucGUCGGGG---CUGUag -5'
29137 3' -64.1 NC_006146.1 + 167353 0.71 0.301542
Target:  5'- cGGCUGCaCGCgCGGCGGCgCCGGCc-- -3'
miRNA:   3'- uCCGGCG-GCG-GUCGUCGgGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 152037 0.71 0.281515
Target:  5'- gAGGCCcCCGCacguccaccacccCGGCAGCgCCCGGgGUCu -3'
miRNA:   3'- -UCCGGcGGCG-------------GUCGUCG-GGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 33235 0.71 0.269769
Target:  5'- cGGGUgGCCGCCGGCGGgUCCGcCGg- -3'
miRNA:   3'- -UCCGgCGGCGGUCGUCgGGGCuGUag -5'
29137 3' -64.1 NC_006146.1 + 58852 0.74 0.173156
Target:  5'- -cGCCGUCaagGCCGGCAGCCCCuuCAUCc -3'
miRNA:   3'- ucCGGCGG---CGGUCGUCGGGGcuGUAG- -5'
29137 3' -64.1 NC_006146.1 + 78675 0.71 0.287858
Target:  5'- cAGGCCGggcCCGCCccccagcAGCAGCCCCaGGCc-- -3'
miRNA:   3'- -UCCGGC---GGCGG-------UCGUCGGGG-CUGuag -5'
29137 3' -64.1 NC_006146.1 + 54912 0.71 0.294964
Target:  5'- uGGCCGgccuucagggaCCGgCAGUAgGCCUCGACGUCu -3'
miRNA:   3'- uCCGGC-----------GGCgGUCGU-CGGGGCUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.