miRNA display CGI


Results 41 - 60 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 99216 0.71 0.282144
Target:  5'- gAGGCCGCgGCCucGGC-GCgCCCGACcaccGUCu -3'
miRNA:   3'- -UCCGGCGgCGG--UCGuCG-GGGCUG----UAG- -5'
29137 3' -64.1 NC_006146.1 + 78883 0.71 0.287858
Target:  5'- cAGGCCGggcCCGCCccccagcAGCAGCCCCaGGCc-- -3'
miRNA:   3'- -UCCGGC---GGCGG-------UCGUCGGGG-CUGuag -5'
29137 3' -64.1 NC_006146.1 + 78585 0.71 0.287858
Target:  5'- cAGGCCGggcCCGCCccccagcAGCAGCCCCaGGCc-- -3'
miRNA:   3'- -UCCGGC---GGCGG-------UCGUCGGGG-CUGuag -5'
29137 3' -64.1 NC_006146.1 + 78675 0.71 0.287858
Target:  5'- cAGGCCGggcCCGCCccccagcAGCAGCCCCaGGCc-- -3'
miRNA:   3'- -UCCGGC---GGCGG-------UCGUCGGGG-CUGuag -5'
29137 3' -64.1 NC_006146.1 + 78735 0.71 0.287858
Target:  5'- cAGGCCGggcCCGCCccccagcAGCAGCCCCaGGCc-- -3'
miRNA:   3'- -UCCGGC---GGCGG-------UCGUCGGGG-CUGuag -5'
29137 3' -64.1 NC_006146.1 + 55244 0.71 0.288498
Target:  5'- cAGGUaCGUCGCCcgGGCGGCCCgGGCGa- -3'
miRNA:   3'- -UCCG-GCGGCGG--UCGUCGGGgCUGUag -5'
29137 3' -64.1 NC_006146.1 + 154654 0.71 0.294964
Target:  5'- -cGCUGCCGCCGGCuGCaCCGugGUg -3'
miRNA:   3'- ucCGGCGGCGGUCGuCGgGGCugUAg -5'
29137 3' -64.1 NC_006146.1 + 54912 0.71 0.294964
Target:  5'- uGGCCGgccuucagggaCCGgCAGUAgGCCUCGACGUCu -3'
miRNA:   3'- uCCGGC-----------GGCgGUCGU-CGGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 167353 0.71 0.301542
Target:  5'- cGGCUGCaCGCgCGGCGGCgCCGGCc-- -3'
miRNA:   3'- uCCGGCG-GCG-GUCGUCGgGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 48255 0.71 0.301542
Target:  5'- aGGGCCcccGCCGCCguccuGGCgcgaaagagGGCCCCGGCcUCc -3'
miRNA:   3'- -UCCGG---CGGCGG-----UCG---------UCGGGGCUGuAG- -5'
29137 3' -64.1 NC_006146.1 + 170148 0.71 0.301542
Target:  5'- cGGCUGCaCGCgCGGCGGCgCCGGCc-- -3'
miRNA:   3'- uCCGGCG-GCG-GUCGUCGgGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 129054 0.71 0.301542
Target:  5'- uGGGCCcagaCGCCGGCgcagacAGCCCCcgcGACAUCc -3'
miRNA:   3'- -UCCGGcg--GCGGUCG------UCGGGG---CUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 37414 0.71 0.301542
Target:  5'- gGGGCCGCgGUgcaAGUAGCCCCGGu--- -3'
miRNA:   3'- -UCCGGCGgCGg--UCGUCGGGGCUguag -5'
29137 3' -64.1 NC_006146.1 + 117748 0.71 0.301542
Target:  5'- cGGCCaCCGCC-GCAGUCCCGcCAc- -3'
miRNA:   3'- uCCGGcGGCGGuCGUCGGGGCuGUag -5'
29137 3' -64.1 NC_006146.1 + 127447 0.71 0.301542
Target:  5'- gAGGCUGCCGCUccagauguGGCGGCCCgcaGGCu-- -3'
miRNA:   3'- -UCCGGCGGCGG--------UCGUCGGGg--CUGuag -5'
29137 3' -64.1 NC_006146.1 + 169217 0.71 0.301542
Target:  5'- cGGCUGCaCGCgCGGCGGCgCCGGCc-- -3'
miRNA:   3'- uCCGGCG-GCG-GUCGUCGgGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 168285 0.71 0.301542
Target:  5'- cGGCUGCaCGCgCGGCGGCgCCGGCc-- -3'
miRNA:   3'- uCCGGCG-GCG-GUCGUCGgGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 113595 0.7 0.305544
Target:  5'- gAGGCCggGUCGCCAGUcucuccgucgccuGCCCCGGCGc- -3'
miRNA:   3'- -UCCGG--CGGCGGUCGu------------CGGGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 33308 0.7 0.308234
Target:  5'- -cGCCGCCGCuCGGUccuggGGCUCCGGgGUCc -3'
miRNA:   3'- ucCGGCGGCG-GUCG-----UCGGGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 115192 0.7 0.308234
Target:  5'- gAGGCCaGCgGCgGGCAGagccCCCCGGCGg- -3'
miRNA:   3'- -UCCGG-CGgCGgUCGUC----GGGGCUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.