miRNA display CGI


Results 41 - 60 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 23192 0.66 0.538476
Target:  5'- cAGGCCccGCCGCCuuccuGGCCCUGuugcuCAUCc -3'
miRNA:   3'- -UCCGG--CGGCGGucg--UCGGGGCu----GUAG- -5'
29137 3' -64.1 NC_006146.1 + 24692 0.67 0.465096
Target:  5'- uGGCCGCCGCUuaccccggAGgAGCCCauGCAg- -3'
miRNA:   3'- uCCGGCGGCGG--------UCgUCGGGgcUGUag -5'
29137 3' -64.1 NC_006146.1 + 25381 0.7 0.315037
Target:  5'- aAGGCgGCCGCCcuCAGUCCCccaGACAg- -3'
miRNA:   3'- -UCCGgCGGCGGucGUCGGGG---CUGUag -5'
29137 3' -64.1 NC_006146.1 + 25752 0.68 0.43893
Target:  5'- cAGGCCaGCCGgagggaccCCGGCAGCCCgGGu--- -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgCUguag -5'
29137 3' -64.1 NC_006146.1 + 26039 0.68 0.42196
Target:  5'- cAGGCCgGCCGgagggaccCCGGCAGCCCgGGa--- -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgCUguag -5'
29137 3' -64.1 NC_006146.1 + 26153 0.69 0.36505
Target:  5'- cAGGCCgGCCGgagggaccCCGGCGGCCCgGugugccaGCGUCc -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgC-------UGUAG- -5'
29137 3' -64.1 NC_006146.1 + 28459 0.7 0.315037
Target:  5'- aAGGCgGCCGCCcuCAGUCCCccaGACAg- -3'
miRNA:   3'- -UCCGgCGGCGGucGUCGGGG---CUGUag -5'
29137 3' -64.1 NC_006146.1 + 28830 0.68 0.43893
Target:  5'- cAGGCCaGCCGgagggaccCCGGCAGCCCgGGu--- -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgCUguag -5'
29137 3' -64.1 NC_006146.1 + 29117 0.68 0.42196
Target:  5'- cAGGCCgGCCGgagggaccCCGGCAGCCCgGGa--- -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgCUguag -5'
29137 3' -64.1 NC_006146.1 + 29231 0.69 0.36505
Target:  5'- cAGGCCgGCCGgagggaccCCGGCGGCCCgGugugccaGCGUCc -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgC-------UGUAG- -5'
29137 3' -64.1 NC_006146.1 + 33134 0.7 0.326862
Target:  5'- cGGGCCGCUGCCccgcuccgggugggGGguGgCCCGGCu-- -3'
miRNA:   3'- -UCCGGCGGCGG--------------UCguCgGGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 33235 0.71 0.269769
Target:  5'- cGGGUgGCCGCCGGCGGgUCCGcCGg- -3'
miRNA:   3'- -UCCGgCGGCGGUCGUCgGGGCuGUag -5'
29137 3' -64.1 NC_006146.1 + 33258 0.7 0.348525
Target:  5'- nGGGCCGCUGCCccgcuccgggugggGGguGgCCCGGCu-- -3'
miRNA:   3'- -UCCGGCGGCGG--------------UCguCgGGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 33308 0.7 0.308234
Target:  5'- -cGCCGCCGCuCGGUccuggGGCUCCGGgGUCc -3'
miRNA:   3'- ucCGGCGGCG-GUCG-----UCGGGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 33357 0.67 0.465096
Target:  5'- cGGGUgGCCGCCGGUGGgUCCGcCGg- -3'
miRNA:   3'- -UCCGgCGGCGGUCGUCgGGGCuGUag -5'
29137 3' -64.1 NC_006146.1 + 33380 0.66 0.523439
Target:  5'- nGGGCCGCUGCCccgcuccggguggggGGUGGCCCgccugGGCAc- -3'
miRNA:   3'- -UCCGGCGGCGG---------------UCGUCGGGg----CUGUag -5'
29137 3' -64.1 NC_006146.1 + 34048 0.7 0.328983
Target:  5'- gGGGCCuauGCCgGCCGGgGGUCCCGugGc- -3'
miRNA:   3'- -UCCGG---CGG-CGGUCgUCGGGGCugUag -5'
29137 3' -64.1 NC_006146.1 + 34097 0.67 0.492051
Target:  5'- gGGGCaGCCGCgaccCAGCGcGCCCCGu--UCa -3'
miRNA:   3'- -UCCGgCGGCG----GUCGU-CGGGGCuguAG- -5'
29137 3' -64.1 NC_006146.1 + 34141 0.67 0.501197
Target:  5'- cGGCCggGCCuCCcGgAGCCCCGGCGa- -3'
miRNA:   3'- uCCGG--CGGcGGuCgUCGGGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 34240 0.69 0.371964
Target:  5'- gAGGCCGCCgcaaggacgccggGCCGGCuGgggguugugcaccCCCCGAgCGUCu -3'
miRNA:   3'- -UCCGGCGG-------------CGGUCGuC-------------GGGGCU-GUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.