miRNA display CGI


Results 41 - 60 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 145533 0.69 0.389238
Target:  5'- aGGGCgGCCGCCuuGgGGCCCgGA-GUCu -3'
miRNA:   3'- -UCCGgCGGCGGu-CgUCGGGgCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 145487 0.68 0.413625
Target:  5'- gAGGCCGgaccCCGCCuGGCGaCCCUGGgGUCu -3'
miRNA:   3'- -UCCGGC----GGCGG-UCGUcGGGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 145370 0.7 0.350746
Target:  5'- gGGGCagaGCCaGCCAGCGGCugaaCCCGAgGa- -3'
miRNA:   3'- -UCCGg--CGG-CGGUCGUCG----GGGCUgUag -5'
29137 3' -64.1 NC_006146.1 + 142455 0.69 0.389238
Target:  5'- aGGGCgGCCGCCuuGgGGCCCgGA-GUCu -3'
miRNA:   3'- -UCCGgCGGCGGu-CgUCGGGgCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 142409 0.68 0.413625
Target:  5'- gAGGCCGgaccCCGCCuGGCGaCCCUGGgGUCu -3'
miRNA:   3'- -UCCGGC----GGCGG-UCGUcGGGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 142292 0.7 0.350746
Target:  5'- gGGGCagaGCCaGCCAGCGGCugaaCCCGAgGa- -3'
miRNA:   3'- -UCCGg--CGG-CGGUCGUCG----GGGCUgUag -5'
29137 3' -64.1 NC_006146.1 + 138070 0.69 0.371964
Target:  5'- gAGGCCGCCgcaaggacgccggGCCGGCuGgggguugugcaccCCCCGAgCGUCu -3'
miRNA:   3'- -UCCGGCGG-------------CGGUCGuC-------------GGGGCU-GUAG- -5'
29137 3' -64.1 NC_006146.1 + 137928 0.67 0.492051
Target:  5'- gGGGCaGCCGCgaccCAGCGcGCCCCGu--UCa -3'
miRNA:   3'- -UCCGgCGGCG----GUCGU-CGGGGCuguAG- -5'
29137 3' -64.1 NC_006146.1 + 137874 0.67 0.473998
Target:  5'- cGGGCCccGCCccggGCCGGCAGgggguCCCCGugGa- -3'
miRNA:   3'- -UCCGG--CGG----CGGUCGUC-----GGGGCugUag -5'
29137 3' -64.1 NC_006146.1 + 137786 0.69 0.373513
Target:  5'- cGGCCcggcgaacCCGCCGGCGGCcaCCCGGCu-- -3'
miRNA:   3'- uCCGGc-------GGCGGUCGUCG--GGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 137668 0.69 0.365814
Target:  5'- cGGCgGacCCGCCGGCGGCcaCCCGGCu-- -3'
miRNA:   3'- uCCGgC--GGCGGUCGUCG--GGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 137599 0.68 0.405392
Target:  5'- cGGGCCGgggGCCGGguGCCCCuGgGUCc -3'
miRNA:   3'- -UCCGGCgg-CGGUCguCGGGGcUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 137562 0.69 0.381322
Target:  5'- cGGGCCGCUGCCGGguccgcugccCGGUCCUGGagcUCg -3'
miRNA:   3'- -UCCGGCGGCGGUC----------GUCGGGGCUgu-AG- -5'
29137 3' -64.1 NC_006146.1 + 137558 0.67 0.492051
Target:  5'- cGGCgGCCacCCGGCuGCCCCGgaGCAc- -3'
miRNA:   3'- uCCGgCGGc-GGUCGuCGGGGC--UGUag -5'
29137 3' -64.1 NC_006146.1 + 137507 0.69 0.397262
Target:  5'- gGGGCCGgggGCCGGguGCCCCuGgGUCc -3'
miRNA:   3'- -UCCGGCgg-CGGUCguCGGGGcUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 137469 0.69 0.381322
Target:  5'- cGGGCCGCUGCCGGguccgcugccCGGUCCUGGagcUCg -3'
miRNA:   3'- -UCCGGCGGCGGUC----------GUCGGGGCUgu-AG- -5'
29137 3' -64.1 NC_006146.1 + 137414 0.69 0.397262
Target:  5'- gGGGCCGgggGCCGGguGCCCCuGgGUCc -3'
miRNA:   3'- -UCCGGCgg-CGGUCguCGGGGcUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 137376 0.69 0.381322
Target:  5'- cGGGCCGCUGCCGGguccgcugccCGGUCCUGGagcUCg -3'
miRNA:   3'- -UCCGGCGGCGGUC----------GUCGGGGCUgu-AG- -5'
29137 3' -64.1 NC_006146.1 + 137321 0.69 0.397262
Target:  5'- gGGGCCGgggGCCGGguGCCCCuGgGUCc -3'
miRNA:   3'- -UCCGGCgg-CGGUCguCGGGGcUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 137283 0.69 0.381322
Target:  5'- cGGGCCGCUGCCGGguccgcugccCGGUCCUGGagcUCg -3'
miRNA:   3'- -UCCGGCGGCGGUC----------GUCGGGGCUgu-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.