miRNA display CGI


Results 41 - 60 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 78830 0.74 0.190529
Target:  5'- cGGGCCGCCcCCcgcAGCAGCCCCaGGCc-- -3'
miRNA:   3'- -UCCGGCGGcGG---UCGUCGGGG-CUGuag -5'
29137 3' -64.1 NC_006146.1 + 22303 0.7 0.315037
Target:  5'- aAGGCgGCCGCCcuCAGUCCCccaGACAg- -3'
miRNA:   3'- -UCCGgCGGCGGucGUCGGGG---CUGUag -5'
29137 3' -64.1 NC_006146.1 + 26153 0.69 0.36505
Target:  5'- cAGGCCgGCCGgagggaccCCGGCGGCCCgGugugccaGCGUCc -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgC-------UGUAG- -5'
29137 3' -64.1 NC_006146.1 + 13842 0.69 0.36505
Target:  5'- cAGGCCgGCCGgagggaccCCGGCGGCCCgGugugccaGCGUCc -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgC-------UGUAG- -5'
29137 3' -64.1 NC_006146.1 + 16147 0.7 0.315037
Target:  5'- aAGGCgGCCGCCcuCAGUCCCccaGACAg- -3'
miRNA:   3'- -UCCGgCGGCGGucGUCGGGG---CUGUag -5'
29137 3' -64.1 NC_006146.1 + 152037 0.71 0.281515
Target:  5'- gAGGCCcCCGCacguccaccacccCGGCAGCgCCCGGgGUCu -3'
miRNA:   3'- -UCCGGcGGCG-------------GUCGUCG-GGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 49918 0.74 0.181659
Target:  5'- gAGGCCGCCgagGCCAcuCGGUCCCgGACGUCc -3'
miRNA:   3'- -UCCGGCGG---CGGUc-GUCGGGG-CUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 58852 0.74 0.173156
Target:  5'- -cGCCGUCaagGCCGGCAGCCCCuuCAUCc -3'
miRNA:   3'- ucCGGCGG---CGGUCGUCGGGGcuGUAG- -5'
29137 3' -64.1 NC_006146.1 + 78675 0.71 0.287858
Target:  5'- cAGGCCGggcCCGCCccccagcAGCAGCCCCaGGCc-- -3'
miRNA:   3'- -UCCGGC---GGCGG-------UCGUCGGGG-CUGuag -5'
29137 3' -64.1 NC_006146.1 + 169217 0.71 0.301542
Target:  5'- cGGCUGCaCGCgCGGCGGCgCCGGCc-- -3'
miRNA:   3'- uCCGGCG-GCG-GUCGUCGgGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 167353 0.71 0.301542
Target:  5'- cGGCUGCaCGCgCGGCGGCgCCGGCc-- -3'
miRNA:   3'- uCCGGCG-GCG-GUCGUCGgGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 99216 0.71 0.282144
Target:  5'- gAGGCCGCgGCCucGGC-GCgCCCGACcaccGUCu -3'
miRNA:   3'- -UCCGGCGgCGG--UCGuCG-GGGCUG----UAG- -5'
29137 3' -64.1 NC_006146.1 + 46979 0.72 0.252033
Target:  5'- cGGCCGCCGCCAGgAauuGCgCCCGuCGg- -3'
miRNA:   3'- uCCGGCGGCGGUCgU---CG-GGGCuGUag -5'
29137 3' -64.1 NC_006146.1 + 49553 0.7 0.328275
Target:  5'- gAGGCCacGCCGgccaggcCCAGCauGGCCUCGAUGUCc -3'
miRNA:   3'- -UCCGG--CGGC-------GGUCG--UCGGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 55699 0.7 0.321954
Target:  5'- cGGCCGCCGCCGGgGgGCUCUGcCcgCc -3'
miRNA:   3'- uCCGGCGGCGGUCgU-CGGGGCuGuaG- -5'
29137 3' -64.1 NC_006146.1 + 130173 0.7 0.308909
Target:  5'- cGGCCGagucguauuuaaagGCCAGCAacGuCCCCGACAUCc -3'
miRNA:   3'- uCCGGCgg------------CGGUCGU--C-GGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 47193 0.7 0.34338
Target:  5'- -cGCCGCCGCCccgAGCgccaGGCCCCuGGCcgCc -3'
miRNA:   3'- ucCGGCGGCGG---UCG----UCGGGG-CUGuaG- -5'
29137 3' -64.1 NC_006146.1 + 57368 0.66 0.567045
Target:  5'- gAGGCUGCggcgguggCGCCGGUgggcuGGCCCCG-CGa- -3'
miRNA:   3'- -UCCGGCG--------GCGGUCG-----UCGGGGCuGUag -5'
29137 3' -64.1 NC_006146.1 + 29231 0.69 0.36505
Target:  5'- cAGGCCgGCCGgagggaccCCGGCGGCCCgGugugccaGCGUCc -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgC-------UGUAG- -5'
29137 3' -64.1 NC_006146.1 + 84814 0.7 0.34338
Target:  5'- uGGGCUGCUGaacaugugCAGUGGCUCCGACAg- -3'
miRNA:   3'- -UCCGGCGGCg-------GUCGUCGGGGCUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.