miRNA display CGI


Results 61 - 80 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 123147 0.67 0.490232
Target:  5'- gAGGCCGUacuCGCCAGggcgcgcgaggaGGCCCCgGACGa- -3'
miRNA:   3'- -UCCGGCG---GCGGUCg-----------UCGGGG-CUGUag -5'
29137 3' -64.1 NC_006146.1 + 114036 0.67 0.486602
Target:  5'- cGGGCgGCCGCCAgccccagccaaagcuGCcGCCCCcGCcgCc -3'
miRNA:   3'- -UCCGgCGGCGGU---------------CGuCGGGGcUGuaG- -5'
29137 3' -64.1 NC_006146.1 + 40382 0.67 0.501197
Target:  5'- uGGUCGCCGCCcggcgcguAGUAGCCuCCcGCGg- -3'
miRNA:   3'- uCCGGCGGCGG--------UCGUCGG-GGcUGUag -5'
29137 3' -64.1 NC_006146.1 + 166796 0.67 0.482984
Target:  5'- uGGCCGCCGUCAucaAGUCCaUGACcgCg -3'
miRNA:   3'- uCCGGCGGCGGUcg-UCGGG-GCUGuaG- -5'
29137 3' -64.1 NC_006146.1 + 54814 0.67 0.482984
Target:  5'- cGGGUgGCCGCCAcCAuGCaCCagGACGUCg -3'
miRNA:   3'- -UCCGgCGGCGGUcGU-CG-GGg-CUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 114322 0.67 0.473998
Target:  5'- cGGGCuCGgCGcCCGGCcGCCCCuGACGg- -3'
miRNA:   3'- -UCCG-GCgGC-GGUCGuCGGGG-CUGUag -5'
29137 3' -64.1 NC_006146.1 + 77961 0.67 0.473998
Target:  5'- uGGGCCGgaGCCGGUGGCCuuGGa--- -3'
miRNA:   3'- -UCCGGCggCGGUCGUCGGggCUguag -5'
29137 3' -64.1 NC_006146.1 + 57200 0.67 0.473998
Target:  5'- cGGCUGCCGCC-GCcGuCCCCGGg--- -3'
miRNA:   3'- uCCGGCGGCGGuCGuC-GGGGCUguag -5'
29137 3' -64.1 NC_006146.1 + 24692 0.67 0.465096
Target:  5'- uGGCCGCCGCUuaccccggAGgAGCCCauGCAg- -3'
miRNA:   3'- uCCGGCGGCGG--------UCgUCGGGgcUGUag -5'
29137 3' -64.1 NC_006146.1 + 117152 0.67 0.510416
Target:  5'- cGcCCGCCGCCcGUcuucGCCCCGGCGc- -3'
miRNA:   3'- uCcGGCGGCGGuCGu---CGGGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 72198 0.67 0.464211
Target:  5'- cGGCgGCCGgaugggcgggagaCCAGCGGCCCCa----- -3'
miRNA:   3'- uCCGgCGGC-------------GGUCGUCGGGGcuguag -5'
29137 3' -64.1 NC_006146.1 + 14120 0.67 0.501197
Target:  5'- gGGGCUGCUGgCGGCGGCCU--ACAg- -3'
miRNA:   3'- -UCCGGCGGCgGUCGUCGGGgcUGUag -5'
29137 3' -64.1 NC_006146.1 + 72929 0.67 0.501197
Target:  5'- uGGCCaGCCGCCccauCuuCCCCGAgGUCa -3'
miRNA:   3'- uCCGG-CGGCGGuc--GucGGGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 757 0.67 0.501197
Target:  5'- cGGcGCCGCCGCgCGuGCAGCCgagcgugaCGACGg- -3'
miRNA:   3'- -UC-CGGCGGCG-GU-CGUCGGg-------GCUGUag -5'
29137 3' -64.1 NC_006146.1 + 9133 0.67 0.510416
Target:  5'- cAGGCCcCCGCCcaGGC-GCCCCcucgGACcUCa -3'
miRNA:   3'- -UCCGGcGGCGG--UCGuCGGGG----CUGuAG- -5'
29137 3' -64.1 NC_006146.1 + 123636 0.67 0.510416
Target:  5'- -aGCCGUCGCCGGUcucGCUCaCGGCGUg -3'
miRNA:   3'- ucCGGCGGCGGUCGu--CGGG-GCUGUAg -5'
29137 3' -64.1 NC_006146.1 + 78620 0.67 0.473998
Target:  5'- cGGGcCCGCCcCCcagcAGCAGCCCCaGGCc-- -3'
miRNA:   3'- -UCC-GGCGGcGG----UCGUCGGGG-CUGuag -5'
29137 3' -64.1 NC_006146.1 + 1688 0.67 0.501197
Target:  5'- cGGcGCCGCCGCgCGuGCAGCCgagcgugaCGACGg- -3'
miRNA:   3'- -UC-CGGCGGCG-GU-CGUCGGg-------GCUGUag -5'
29137 3' -64.1 NC_006146.1 + 2620 0.67 0.501197
Target:  5'- cGGcGCCGCCGCgCGuGCAGCCgagcgugaCGACGg- -3'
miRNA:   3'- -UC-CGGCGGCG-GU-CGUCGGg-------GCUGUag -5'
29137 3' -64.1 NC_006146.1 + 3552 0.67 0.501197
Target:  5'- cGGcGCCGCCGCgCGuGCAGCCgagcgugaCGACGg- -3'
miRNA:   3'- -UC-CGGCGGCG-GU-CGUCGGg-------GCUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.