miRNA display CGI


Results 61 - 80 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 148448 0.7 0.350746
Target:  5'- gGGGCagaGCCaGCCAGCGGCugaaCCCGAgGa- -3'
miRNA:   3'- -UCCGg--CGG-CGGUCGUCG----GGGCUgUag -5'
29137 3' -64.1 NC_006146.1 + 151526 0.7 0.350746
Target:  5'- gGGGCagaGCCaGCCAGCGGCugaaCCCGAgGa- -3'
miRNA:   3'- -UCCGg--CGG-CGGUCGUCG----GGGCUgUag -5'
29137 3' -64.1 NC_006146.1 + 154604 0.7 0.350746
Target:  5'- gGGGCagaGCCaGCCAGCGGCugaaCCCGAgGa- -3'
miRNA:   3'- -UCCGg--CGG-CGGUCGUCG----GGGCUgUag -5'
29137 3' -64.1 NC_006146.1 + 102042 0.7 0.352978
Target:  5'- cAGGCUGUCGCCAGCcugcuuguccagcagGGCCuuGAgcccgcucucgucCAUCu -3'
miRNA:   3'- -UCCGGCGGCGGUCG---------------UCGGggCU-------------GUAG- -5'
29137 3' -64.1 NC_006146.1 + 33308 0.7 0.308234
Target:  5'- -cGCCGCCGCuCGGUccuggGGCUCCGGgGUCc -3'
miRNA:   3'- ucCGGCGGCG-GUCG-----UCGGGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 113595 0.7 0.305544
Target:  5'- gAGGCCggGUCGCCAGUcucuccgucgccuGCCCCGGCGc- -3'
miRNA:   3'- -UCCGG--CGGCGGUCGu------------CGGGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 1862 0.7 0.335406
Target:  5'- cGGgCGCgCGCCGGCcucccgucccgaaGGCCCUGGCAc- -3'
miRNA:   3'- uCCgGCG-GCGGUCG-------------UCGGGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 122581 0.7 0.315037
Target:  5'- uGGCCcaccaCCGCCAGCAcCUCCGACGg- -3'
miRNA:   3'- uCCGGc----GGCGGUCGUcGGGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 930 0.7 0.335406
Target:  5'- cGGgCGCgCGCCGGCcucccgucccgaaGGCCCUGGCAc- -3'
miRNA:   3'- uCCgGCG-GCGGUCG-------------UCGGGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 2794 0.7 0.335406
Target:  5'- cGGgCGCgCGCCGGCcucccgucccgaaGGCCCUGGCAc- -3'
miRNA:   3'- uCCgGCG-GCGGUCG-------------UCGGGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 115192 0.7 0.308234
Target:  5'- gAGGCCaGCgGCgGGCAGagccCCCCGGCGg- -3'
miRNA:   3'- -UCCGG-CGgCGgUCGUC----GGGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 115853 0.7 0.321954
Target:  5'- cGGCCGCCuguggcagGCCc-CGGCCCCGACc-- -3'
miRNA:   3'- uCCGGCGG--------CGGucGUCGGGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 3726 0.7 0.335406
Target:  5'- cGGgCGCgCGCCGGCcucccgucccgaaGGCCCUGGCAc- -3'
miRNA:   3'- uCCgGCG-GCGGUCG-------------UCGGGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 25381 0.7 0.315037
Target:  5'- aAGGCgGCCGCCcuCAGUCCCccaGACAg- -3'
miRNA:   3'- -UCCGgCGGCGGucGUCGGGG---CUGUag -5'
29137 3' -64.1 NC_006146.1 + 22303 0.7 0.315037
Target:  5'- aAGGCgGCCGCCcuCAGUCCCccaGACAg- -3'
miRNA:   3'- -UCCGgCGGCGGucGUCGGGG---CUGUag -5'
29137 3' -64.1 NC_006146.1 + 19225 0.7 0.315037
Target:  5'- aAGGCgGCCGCCcuCAGUCCCccaGACAg- -3'
miRNA:   3'- -UCCGgCGGCGGucGUCGGGG---CUGUag -5'
29137 3' -64.1 NC_006146.1 + 16147 0.7 0.315037
Target:  5'- aAGGCgGCCGCCcuCAGUCCCccaGACAg- -3'
miRNA:   3'- -UCCGgCGGCGGucGUCGGGG---CUGUag -5'
29137 3' -64.1 NC_006146.1 + 13069 0.7 0.315037
Target:  5'- aAGGCgGCCGCCcuCAGUCCCccaGACAg- -3'
miRNA:   3'- -UCCGgCGGCGGucGUCGGGG---CUGUag -5'
29137 3' -64.1 NC_006146.1 + 130173 0.7 0.308909
Target:  5'- cGGCCGagucguauuuaaagGCCAGCAacGuCCCCGACAUCc -3'
miRNA:   3'- uCCGGCgg------------CGGUCGU--C-GGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 118565 0.7 0.34338
Target:  5'- aAGGaCGCCGCCccgGGCA-CCCCGGCccacGUCa -3'
miRNA:   3'- -UCCgGCGGCGG---UCGUcGGGGCUG----UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.