miRNA display CGI


Results 61 - 80 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 127984 0.67 0.492051
Target:  5'- uGGcGCCGCUGCugacagccgggaCAGaCGGCCCUaGCGUCg -3'
miRNA:   3'- -UC-CGGCGGCG------------GUC-GUCGGGGcUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 137558 0.67 0.492051
Target:  5'- cGGCgGCCacCCGGCuGCCCCGgaGCAc- -3'
miRNA:   3'- uCCGgCGGc-GGUCGuCGGGGC--UGUag -5'
29137 3' -64.1 NC_006146.1 + 137928 0.67 0.492051
Target:  5'- gGGGCaGCCGCgaccCAGCGcGCCCCGu--UCa -3'
miRNA:   3'- -UCCGgCGGCG----GUCGU-CGGGGCuguAG- -5'
29137 3' -64.1 NC_006146.1 + 67994 0.67 0.492051
Target:  5'- uGGGgCGCaGCCAcGCcacacGGCCCCuGGCGUCc -3'
miRNA:   3'- -UCCgGCGgCGGU-CG-----UCGGGG-CUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 34097 0.67 0.492051
Target:  5'- gGGGCaGCCGCgaccCAGCGcGCCCCGu--UCa -3'
miRNA:   3'- -UCCGgCGGCG----GUCGU-CGGGGCuguAG- -5'
29137 3' -64.1 NC_006146.1 + 155184 0.67 0.492051
Target:  5'- gAGGaaacaGCCcccucuccucgGCCAGUGGCCCCGugAUg -3'
miRNA:   3'- -UCCgg---CGG-----------CGGUCGUCGGGGCugUAg -5'
29137 3' -64.1 NC_006146.1 + 123147 0.67 0.490232
Target:  5'- gAGGCCGUacuCGCCAGggcgcgcgaggaGGCCCCgGACGa- -3'
miRNA:   3'- -UCCGGCG---GCGGUCg-----------UCGGGG-CUGUag -5'
29137 3' -64.1 NC_006146.1 + 114036 0.67 0.486602
Target:  5'- cGGGCgGCCGCCAgccccagccaaagcuGCcGCCCCcGCcgCc -3'
miRNA:   3'- -UCCGgCGGCGGU---------------CGuCGGGGcUGuaG- -5'
29137 3' -64.1 NC_006146.1 + 124465 0.67 0.482984
Target:  5'- -cGCCGCCGCCuuccuGGgGGCCCCcuCGUUc -3'
miRNA:   3'- ucCGGCGGCGG-----UCgUCGGGGcuGUAG- -5'
29137 3' -64.1 NC_006146.1 + 166796 0.67 0.482984
Target:  5'- uGGCCGCCGUCAucaAGUCCaUGACcgCg -3'
miRNA:   3'- uCCGGCGGCGGUcg-UCGGG-GCUGuaG- -5'
29137 3' -64.1 NC_006146.1 + 54814 0.67 0.482984
Target:  5'- cGGGUgGCCGCCAcCAuGCaCCagGACGUCg -3'
miRNA:   3'- -UCCGgCGGCGGUcGU-CG-GGg-CUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 98545 0.67 0.473998
Target:  5'- -cGUCGCCGCCAGCcgguccagGGCCCaagcgaaGGCcUCa -3'
miRNA:   3'- ucCGGCGGCGGUCG--------UCGGGg------CUGuAG- -5'
29137 3' -64.1 NC_006146.1 + 57200 0.67 0.473998
Target:  5'- cGGCUGCCGCC-GCcGuCCCCGGg--- -3'
miRNA:   3'- uCCGGCGGCGGuCGuC-GGGGCUguag -5'
29137 3' -64.1 NC_006146.1 + 77961 0.67 0.473998
Target:  5'- uGGGCCGgaGCCGGUGGCCuuGGa--- -3'
miRNA:   3'- -UCCGGCggCGGUCGUCGGggCUguag -5'
29137 3' -64.1 NC_006146.1 + 114322 0.67 0.473998
Target:  5'- cGGGCuCGgCGcCCGGCcGCCCCuGACGg- -3'
miRNA:   3'- -UCCG-GCgGC-GGUCGuCGGGG-CUGUag -5'
29137 3' -64.1 NC_006146.1 + 47881 0.67 0.473998
Target:  5'- uGGGCCGCCucggccucgGUCAGC-GCUCCGAgAa- -3'
miRNA:   3'- -UCCGGCGG---------CGGUCGuCGGGGCUgUag -5'
29137 3' -64.1 NC_006146.1 + 137874 0.67 0.473998
Target:  5'- cGGGCCccGCCccggGCCGGCAGgggguCCCCGugGa- -3'
miRNA:   3'- -UCCGG--CGG----CGGUCGUC-----GGGGCugUag -5'
29137 3' -64.1 NC_006146.1 + 158984 0.67 0.473998
Target:  5'- gAGGCCGCaaaGaCCAGguGCUCC-ACcgCg -3'
miRNA:   3'- -UCCGGCGg--C-GGUCguCGGGGcUGuaG- -5'
29137 3' -64.1 NC_006146.1 + 78620 0.67 0.473998
Target:  5'- cGGGcCCGCCcCCcagcAGCAGCCCCaGGCc-- -3'
miRNA:   3'- -UCC-GGCGGcGG----UCGUCGGGG-CUGuag -5'
29137 3' -64.1 NC_006146.1 + 18951 0.67 0.465096
Target:  5'- aGGGCaUGUggugCGCCAGCGGCCCCuagagagggcGGCAg- -3'
miRNA:   3'- -UCCG-GCG----GCGGUCGUCGGGG----------CUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.