miRNA display CGI


Results 61 - 80 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 37414 0.71 0.301542
Target:  5'- gGGGCCGCgGUgcaAGUAGCCCCGGu--- -3'
miRNA:   3'- -UCCGGCGgCGg--UCGUCGGGGCUguag -5'
29137 3' -64.1 NC_006146.1 + 39817 0.74 0.173156
Target:  5'- cGGCCGuuGacggcCCGGCGGCCUCGGCcgCa -3'
miRNA:   3'- uCCGGCggC-----GGUCGUCGGGGCUGuaG- -5'
29137 3' -64.1 NC_006146.1 + 40382 0.67 0.501197
Target:  5'- uGGUCGCCGCCcggcgcguAGUAGCCuCCcGCGg- -3'
miRNA:   3'- uCCGGCGGCGG--------UCGUCGG-GGcUGUag -5'
29137 3' -64.1 NC_006146.1 + 41848 0.69 0.389238
Target:  5'- cGGGCCGUgGCCAGgGGCUaCCGGgGccUCg -3'
miRNA:   3'- -UCCGGCGgCGGUCgUCGG-GGCUgU--AG- -5'
29137 3' -64.1 NC_006146.1 + 42633 0.71 0.282144
Target:  5'- cGGCCGCCGCCGugGGCCUC-ACGUa -3'
miRNA:   3'- uCCGGCGGCGGUcgUCGGGGcUGUAg -5'
29137 3' -64.1 NC_006146.1 + 42897 0.68 0.456283
Target:  5'- cGGGCCGaCGCUagGGCcucuGUCCCGGCuGUCa -3'
miRNA:   3'- -UCCGGCgGCGG--UCGu---CGGGGCUG-UAG- -5'
29137 3' -64.1 NC_006146.1 + 43245 0.66 0.567045
Target:  5'- gGGGUgccuCGgCGCCAGCgcGGCCUgGACAa- -3'
miRNA:   3'- -UCCG----GCgGCGGUCG--UCGGGgCUGUag -5'
29137 3' -64.1 NC_006146.1 + 43336 0.71 0.282144
Target:  5'- cGGCCGCCcaggGCCAgcaggcGCAGCCCgUGGCAg- -3'
miRNA:   3'- uCCGGCGG----CGGU------CGUCGGG-GCUGUag -5'
29137 3' -64.1 NC_006146.1 + 44741 0.69 0.386852
Target:  5'- cGGUgGCCGCgGGCGGCugugguugucggggCCCGGCGg- -3'
miRNA:   3'- uCCGgCGGCGgUCGUCG--------------GGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 45120 0.66 0.547949
Target:  5'- cGGCCGgugaCCGCCGGgAGCCuuGGg--- -3'
miRNA:   3'- uCCGGC----GGCGGUCgUCGGggCUguag -5'
29137 3' -64.1 NC_006146.1 + 45810 0.76 0.139151
Target:  5'- aAGGCCGCCGCCacGGCcGCCUCGAa--- -3'
miRNA:   3'- -UCCGGCGGCGG--UCGuCGGGGCUguag -5'
29137 3' -64.1 NC_006146.1 + 46249 0.66 0.518773
Target:  5'- aGGGCCGgUGaagCGGCGGugcgcguCCCCGACGUUu -3'
miRNA:   3'- -UCCGGCgGCg--GUCGUC-------GGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 46643 0.66 0.519705
Target:  5'- gGGGCCGagaCGUacucccugAGCAGuuCCCCGGCGUUg -3'
miRNA:   3'- -UCCGGCg--GCGg-------UCGUC--GGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 46979 0.72 0.252033
Target:  5'- cGGCCGCCGCCAGgAauuGCgCCCGuCGg- -3'
miRNA:   3'- uCCGGCGGCGGUCgU---CG-GGGCuGUag -5'
29137 3' -64.1 NC_006146.1 + 47054 0.68 0.413625
Target:  5'- gGGGCCgGUCGCCGGUgucggugagggGGCgCCUGACGa- -3'
miRNA:   3'- -UCCGG-CGGCGGUCG-----------UCG-GGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 47193 0.7 0.34338
Target:  5'- -cGCCGCCGCCccgAGCgccaGGCCCCuGGCcgCc -3'
miRNA:   3'- ucCGGCGGCGG---UCG----UCGGGG-CUGuaG- -5'
29137 3' -64.1 NC_006146.1 + 47507 0.67 0.501197
Target:  5'- cGGCCGCCGCggccaguucCAGCcagguugcggGGcCCCCGGCc-- -3'
miRNA:   3'- uCCGGCGGCG---------GUCG----------UC-GGGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 47881 0.67 0.473998
Target:  5'- uGGGCCGCCucggccucgGUCAGC-GCUCCGAgAa- -3'
miRNA:   3'- -UCCGGCGG---------CGGUCGuCGGGGCUgUag -5'
29137 3' -64.1 NC_006146.1 + 48037 0.66 0.566086
Target:  5'- cGGGCCggcucggGUCGuCCAGC-GCCCCGgGCAg- -3'
miRNA:   3'- -UCCGG-------CGGC-GGUCGuCGGGGC-UGUag -5'
29137 3' -64.1 NC_006146.1 + 48094 0.7 0.34338
Target:  5'- cGGCgGCCGaCAGCgcGGCCUCGGCcgCc -3'
miRNA:   3'- uCCGgCGGCgGUCG--UCGGGGCUGuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.