miRNA display CGI


Results 61 - 80 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 13842 0.69 0.36505
Target:  5'- cAGGCCgGCCGgagggaccCCGGCGGCCCgGugugccaGCGUCc -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgC-------UGUAG- -5'
29137 3' -64.1 NC_006146.1 + 66529 0.71 0.269769
Target:  5'- -cGCCGCUGUCaaacagGGgGGCCCCGAUGUCu -3'
miRNA:   3'- ucCGGCGGCGG------UCgUCGGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 13069 0.7 0.315037
Target:  5'- aAGGCgGCCGCCcuCAGUCCCccaGACAg- -3'
miRNA:   3'- -UCCGgCGGCGGucGUCGGGG---CUGUag -5'
29137 3' -64.1 NC_006146.1 + 25381 0.7 0.315037
Target:  5'- aAGGCgGCCGCCcuCAGUCCCccaGACAg- -3'
miRNA:   3'- -UCCGgCGGCGGucGUCGGGG---CUGUag -5'
29137 3' -64.1 NC_006146.1 + 62338 0.7 0.315037
Target:  5'- -cGCCGCCGCCAGCcaAGCCCaGcCAc- -3'
miRNA:   3'- ucCGGCGGCGGUCG--UCGGGgCuGUag -5'
29137 3' -64.1 NC_006146.1 + 55941 0.72 0.257836
Target:  5'- uGGGCUGCUGCguGCc-CCCCGcCAUCg -3'
miRNA:   3'- -UCCGGCGGCGguCGucGGGGCuGUAG- -5'
29137 3' -64.1 NC_006146.1 + 78585 0.71 0.287858
Target:  5'- cAGGCCGggcCCGCCccccagcAGCAGCCCCaGGCc-- -3'
miRNA:   3'- -UCCGGC---GGCGG-------UCGUCGGGG-CUGuag -5'
29137 3' -64.1 NC_006146.1 + 168285 0.71 0.301542
Target:  5'- cGGCUGCaCGCgCGGCGGCgCCGGCc-- -3'
miRNA:   3'- uCCGGCG-GCG-GUCGUCGgGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 170148 0.71 0.301542
Target:  5'- cGGCUGCaCGCgCGGCGGCgCCGGCc-- -3'
miRNA:   3'- uCCGGCG-GCG-GUCGUCGgGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 78735 0.71 0.287858
Target:  5'- cAGGCCGggcCCGCCccccagcAGCAGCCCCaGGCc-- -3'
miRNA:   3'- -UCCGGC---GGCGG-------UCGUCGGGG-CUGuag -5'
29137 3' -64.1 NC_006146.1 + 49918 0.74 0.181659
Target:  5'- gAGGCCGCCgagGCCAcuCGGUCCCgGACGUCc -3'
miRNA:   3'- -UCCGGCGG---CGGUc-GUCGGGG-CUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 78830 0.74 0.190529
Target:  5'- cGGGCCGCCcCCcgcAGCAGCCCCaGGCc-- -3'
miRNA:   3'- -UCCGGCGGcGG---UCGUCGGGG-CUGuag -5'
29137 3' -64.1 NC_006146.1 + 26153 0.69 0.36505
Target:  5'- cAGGCCgGCCGgagggaccCCGGCGGCCCgGugugccaGCGUCc -3'
miRNA:   3'- -UCCGG-CGGC--------GGUCGUCGGGgC-------UGUAG- -5'
29137 3' -64.1 NC_006146.1 + 135611 0.69 0.381322
Target:  5'- cGGGCCGCUGCCGGguccgcugccCGGUCCUGGagcUCg -3'
miRNA:   3'- -UCCGGCGGCGGUC----------GUCGGGGCUgu-AG- -5'
29137 3' -64.1 NC_006146.1 + 136540 0.69 0.381322
Target:  5'- cGGGCCGCUGCCGGguccgcugccCGGUCCUGGagcUCg -3'
miRNA:   3'- -UCCGGCGGCGGUC----------GUCGGGGCUgu-AG- -5'
29137 3' -64.1 NC_006146.1 + 136818 0.69 0.381322
Target:  5'- cGGGCCGCUGCCGGguccgcugccCGGUCCUGGagcUCg -3'
miRNA:   3'- -UCCGGCGGCGGUC----------GUCGGGGCUgu-AG- -5'
29137 3' -64.1 NC_006146.1 + 135889 0.69 0.381322
Target:  5'- cGGGCCGCUGCCGGguccgcugccCGGUCCUGGagcUCg -3'
miRNA:   3'- -UCCGGCGGCGGUC----------GUCGGGGCUgu-AG- -5'
29137 3' -64.1 NC_006146.1 + 33258 0.7 0.348525
Target:  5'- nGGGCCGCUGCCccgcuccgggugggGGguGgCCCGGCu-- -3'
miRNA:   3'- -UCCGGCGGCGG--------------UCguCgGGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 138070 0.69 0.371964
Target:  5'- gAGGCCGCCgcaaggacgccggGCCGGCuGgggguugugcaccCCCCGAgCGUCu -3'
miRNA:   3'- -UCCGGCGG-------------CGGUCGuC-------------GGGGCU-GUAG- -5'
29137 3' -64.1 NC_006146.1 + 135239 0.69 0.381322
Target:  5'- cGGGCCGCUGCCGGguccgcugccCGGUCCUGGagcUCg -3'
miRNA:   3'- -UCCGGCGGCGGUC----------GUCGGGGCUgu-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.