miRNA display CGI


Results 81 - 100 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 47881 0.67 0.473998
Target:  5'- uGGGCCGCCucggccucgGUCAGC-GCUCCGAgAa- -3'
miRNA:   3'- -UCCGGCGG---------CGGUCGuCGGGGCUgUag -5'
29137 3' -64.1 NC_006146.1 + 68973 0.67 0.465096
Target:  5'- cGGUCaCCGCCcccGCGGCCaCCGGCGc- -3'
miRNA:   3'- uCCGGcGGCGGu--CGUCGG-GGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 34097 0.67 0.492051
Target:  5'- gGGGCaGCCGCgaccCAGCGcGCCCCGu--UCa -3'
miRNA:   3'- -UCCGgCGGCG----GUCGU-CGGGGCuguAG- -5'
29137 3' -64.1 NC_006146.1 + 137928 0.67 0.492051
Target:  5'- gGGGCaGCCGCgaccCAGCGcGCCCCGu--UCa -3'
miRNA:   3'- -UCCGgCGGCG----GUCGU-CGGGGCuguAG- -5'
29137 3' -64.1 NC_006146.1 + 98545 0.67 0.473998
Target:  5'- -cGUCGCCGCCAGCcgguccagGGCCCaagcgaaGGCcUCa -3'
miRNA:   3'- ucCGGCGGCGGUCG--------UCGGGg------CUGuAG- -5'
29137 3' -64.1 NC_006146.1 + 158984 0.67 0.473998
Target:  5'- gAGGCCGCaaaGaCCAGguGCUCC-ACcgCg -3'
miRNA:   3'- -UCCGGCGg--C-GGUCguCGGGGcUGuaG- -5'
29137 3' -64.1 NC_006146.1 + 123636 0.67 0.510416
Target:  5'- -aGCCGUCGCCGGUcucGCUCaCGGCGUg -3'
miRNA:   3'- ucCGGCGGCGGUCGu--CGGG-GCUGUAg -5'
29137 3' -64.1 NC_006146.1 + 67669 0.68 0.43636
Target:  5'- cGGCCGCCaaccGCCAGUuuggauucaugauaAGCCCgacggaCGGCAUUu -3'
miRNA:   3'- uCCGGCGG----CGGUCG--------------UCGGG------GCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 123264 0.68 0.430396
Target:  5'- cGGGCCGCgGCCAgagacggcucGUGGCCCuauCGGCgAUCc -3'
miRNA:   3'- -UCCGGCGgCGGU----------CGUCGGG---GCUG-UAG- -5'
29137 3' -64.1 NC_006146.1 + 101276 0.68 0.419449
Target:  5'- -aGCCGCCcCCAGUaccccggggacgugGGCCUgGACGUCu -3'
miRNA:   3'- ucCGGCGGcGGUCG--------------UCGGGgCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 157798 0.68 0.413625
Target:  5'- gAGGCCGgaccCCGCCuGGCGaCCCUGGgGUCu -3'
miRNA:   3'- -UCCGGC----GGCGG-UCGUcGGGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 154720 0.68 0.413625
Target:  5'- gAGGCCGgaccCCGCCuGGCGaCCCUGGgGUCu -3'
miRNA:   3'- -UCCGGC----GGCGG-UCGUcGGGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 151643 0.68 0.413625
Target:  5'- gAGGCCGgaccCCGCCuGGCGaCCCUGGgGUCu -3'
miRNA:   3'- -UCCGGC----GGCGG-UCGUcGGGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 148565 0.68 0.413625
Target:  5'- gAGGCCGgaccCCGCCuGGCGaCCCUGGgGUCu -3'
miRNA:   3'- -UCCGGC----GGCGG-UCGUcGGGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 145487 0.68 0.413625
Target:  5'- gAGGCCGgaccCCGCCuGGCGaCCCUGGgGUCu -3'
miRNA:   3'- -UCCGGC----GGCGG-UCGUcGGGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 142409 0.68 0.413625
Target:  5'- gAGGCCGgaccCCGCCuGGCGaCCCUGGgGUCu -3'
miRNA:   3'- -UCCGGC----GGCGG-UCGUcGGGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 118983 0.68 0.413625
Target:  5'- gGGGCCGcCCGUCGGUgccucggaGGCCCCcgccGACGc- -3'
miRNA:   3'- -UCCGGC-GGCGGUCG--------UCGGGG----CUGUag -5'
29137 3' -64.1 NC_006146.1 + 100735 0.68 0.405392
Target:  5'- cGGCCucGCCGgccaCCAGC-GCCCCGGCc-- -3'
miRNA:   3'- uCCGG--CGGC----GGUCGuCGGGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 165309 0.68 0.405392
Target:  5'- uGGCgGCCGUCgggugAGCagAGCCCCGAgAUg -3'
miRNA:   3'- uCCGgCGGCGG-----UCG--UCGGGGCUgUAg -5'
29137 3' -64.1 NC_006146.1 + 42897 0.68 0.456283
Target:  5'- cGGGCCGaCGCUagGGCcucuGUCCCGGCuGUCa -3'
miRNA:   3'- -UCCGGCgGCGG--UCGu---CGGGGCUG-UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.