miRNA display CGI


Results 81 - 100 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 48255 0.71 0.301542
Target:  5'- aGGGCCcccGCCGCCguccuGGCgcgaaagagGGCCCCGGCcUCc -3'
miRNA:   3'- -UCCGG---CGGCGG-----UCG---------UCGGGGCUGuAG- -5'
29137 3' -64.1 NC_006146.1 + 49553 0.7 0.328275
Target:  5'- gAGGCCacGCCGgccaggcCCAGCauGGCCUCGAUGUCc -3'
miRNA:   3'- -UCCGG--CGGC-------GGUCG--UCGGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 49918 0.74 0.181659
Target:  5'- gAGGCCGCCgagGCCAcuCGGUCCCgGACGUCc -3'
miRNA:   3'- -UCCGGCGG---CGGUc-GUCGGGG-CUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 50354 0.75 0.16501
Target:  5'- cGGCCaGCCuggggaucuugGCCAGCAGUCCCGccgccGCAUCc -3'
miRNA:   3'- uCCGG-CGG-----------CGGUCGUCGGGGC-----UGUAG- -5'
29137 3' -64.1 NC_006146.1 + 52158 0.66 0.567045
Target:  5'- -aGCCGCUGCCGuuGGCCUCGuaaaaGUCg -3'
miRNA:   3'- ucCGGCGGCGGUcgUCGGGGCug---UAG- -5'
29137 3' -64.1 NC_006146.1 + 52841 0.66 0.567045
Target:  5'- aGGGCCgaGCCGCC-GCcGCCCCcGCc-- -3'
miRNA:   3'- -UCCGG--CGGCGGuCGuCGGGGcUGuag -5'
29137 3' -64.1 NC_006146.1 + 53168 0.66 0.547949
Target:  5'- cGGCgGUgGCCGGaaggcucggccuCGGCCCCGGCcUUg -3'
miRNA:   3'- uCCGgCGgCGGUC------------GUCGGGGCUGuAG- -5'
29137 3' -64.1 NC_006146.1 + 54064 0.69 0.397262
Target:  5'- aGGGCCcaccugGCCGCC-GC-GUCCCGGCAc- -3'
miRNA:   3'- -UCCGG------CGGCGGuCGuCGGGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 54625 0.67 0.465096
Target:  5'- cGGCCGCCucucugguCCGGUGGCUCCccgGGCAUUg -3'
miRNA:   3'- uCCGGCGGc-------GGUCGUCGGGG---CUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 54781 0.68 0.455406
Target:  5'- aGGGCCGCCagggagcgcGCCuugGGCAGCucguuggagaggaCCCGGCGg- -3'
miRNA:   3'- -UCCGGCGG---------CGG---UCGUCG-------------GGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 54814 0.67 0.482984
Target:  5'- cGGGUgGCCGCCAcCAuGCaCCagGACGUCg -3'
miRNA:   3'- -UCCGgCGGCGGUcGU-CG-GGg-CUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 54912 0.71 0.294964
Target:  5'- uGGCCGgccuucagggaCCGgCAGUAgGCCUCGACGUCu -3'
miRNA:   3'- uCCGGC-----------GGCgGUCGU-CGGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 55244 0.71 0.288498
Target:  5'- cAGGUaCGUCGCCcgGGCGGCCCgGGCGa- -3'
miRNA:   3'- -UCCG-GCGGCGG--UCGUCGGGgCUGUag -5'
29137 3' -64.1 NC_006146.1 + 55344 0.66 0.567045
Target:  5'- aGGGCCGCgguCGCCucCAGCCCCcGCc-- -3'
miRNA:   3'- -UCCGGCG---GCGGucGUCGGGGcUGuag -5'
29137 3' -64.1 NC_006146.1 + 55494 0.73 0.209413
Target:  5'- gAGGCCcgGCCGCCAGCuGCCuCCuGCAc- -3'
miRNA:   3'- -UCCGG--CGGCGGUCGuCGG-GGcUGUag -5'
29137 3' -64.1 NC_006146.1 + 55547 0.66 0.52906
Target:  5'- -cGCCGCCacGCCGGCcaggaaGGCCUCGAUg-- -3'
miRNA:   3'- ucCGGCGG--CGGUCG------UCGGGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 55699 0.7 0.321954
Target:  5'- cGGCCGCCGCCGGgGgGCUCUGcCcgCc -3'
miRNA:   3'- uCCGGCGGCGGUCgU-CGGGGCuGuaG- -5'
29137 3' -64.1 NC_006146.1 + 55941 0.72 0.257836
Target:  5'- uGGGCUGCUGCguGCc-CCCCGcCAUCg -3'
miRNA:   3'- -UCCGGCGGCGguCGucGGGGCuGUAG- -5'
29137 3' -64.1 NC_006146.1 + 56518 0.68 0.413625
Target:  5'- gGGGUCGUCGCCGGCcaucAGCagCUGACgcGUCa -3'
miRNA:   3'- -UCCGGCGGCGGUCG----UCGg-GGCUG--UAG- -5'
29137 3' -64.1 NC_006146.1 + 56599 0.68 0.413625
Target:  5'- gAGcCCGCCGCCGGUcuCCucgCCGGCGUCc -3'
miRNA:   3'- -UCcGGCGGCGGUCGucGG---GGCUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.