miRNA display CGI


Results 41 - 60 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 5' -58.1 NC_006146.1 + 95962 0.66 0.845533
Target:  5'- uGGACUCUGuacuGGCCcagguUCCAGauccuguacuGCCUGGGGc -3'
miRNA:   3'- cCCUGAGAU----CUGG-----AGGUC----------UGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 24074 0.66 0.845533
Target:  5'- cGGGCUCUAcgcuggcgcGGCCUC---GCCUGGGAc -3'
miRNA:   3'- cCCUGAGAU---------CUGGAGgucUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 153300 0.66 0.845533
Target:  5'- --uGCUCcAGGCa-CCAGGCCCGGGc -3'
miRNA:   3'- cccUGAGaUCUGgaGGUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 120706 0.66 0.845533
Target:  5'- cGGACgCUGGAgCagcaCCuGAUCCGGGAg -3'
miRNA:   3'- cCCUGaGAUCUgGa---GGuCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 1623 0.66 0.844755
Target:  5'- cGGGACcccgcgCUGGcCCccgCCAGGCCCcggccccgcccucGGGAg -3'
miRNA:   3'- -CCCUGa-----GAUCuGGa--GGUCUGGG-------------CCCU- -5'
29137 5' -58.1 NC_006146.1 + 692 0.66 0.844755
Target:  5'- cGGGACcccgcgCUGGcCCccgCCAGGCCCcggccccgcccucGGGAg -3'
miRNA:   3'- -CCCUGa-----GAUCuGGa--GGUCUGGG-------------CCCU- -5'
29137 5' -58.1 NC_006146.1 + 3487 0.66 0.844755
Target:  5'- cGGGACcccgcgCUGGcCCccgCCAGGCCCcggccccgcccucGGGAg -3'
miRNA:   3'- -CCCUGa-----GAUCuGGa--GGUCUGGG-------------CCCU- -5'
29137 5' -58.1 NC_006146.1 + 2555 0.66 0.844755
Target:  5'- cGGGACcccgcgCUGGcCCccgCCAGGCCCcggccccgcccucGGGAg -3'
miRNA:   3'- -CCCUGa-----GAUCuGGa--GGUCUGGG-------------CCCU- -5'
29137 5' -58.1 NC_006146.1 + 40203 0.66 0.843191
Target:  5'- cGGGCUCUcucuuUCUCUuguuggcacgcgagGGGCCCGGGAu -3'
miRNA:   3'- cCCUGAGAucu--GGAGG--------------UCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 44363 0.67 0.82962
Target:  5'- gGGGACgaggugCcAGACCcCC--GCCCGGGGg -3'
miRNA:   3'- -CCCUGa-----GaUCUGGaGGucUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 32030 0.67 0.821406
Target:  5'- cGGGACgaggcgCUGGcCCaggUCAuGACCCGGGc -3'
miRNA:   3'- -CCCUGa-----GAUCuGGa--GGU-CUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 93942 0.67 0.816401
Target:  5'- cGGGGCUCcGcucuccgucccaggcGACCUCCAGcggcaguucACCCGGc- -3'
miRNA:   3'- -CCCUGAGaU---------------CUGGAGGUC---------UGGGCCcu -5'
29137 5' -58.1 NC_006146.1 + 149592 0.67 0.816401
Target:  5'- aGGGGCggcgggagaggaggCUGGccGCCUCCuuuACCCGGGc -3'
miRNA:   3'- -CCCUGa-------------GAUC--UGGAGGuc-UGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 55810 0.67 0.813032
Target:  5'- cGGGGCgguggaagAGGCCgUCCcGGCCUGGGu -3'
miRNA:   3'- -CCCUGaga-----UCUGG-AGGuCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 114768 0.67 0.804502
Target:  5'- aGGGCUCUcGGUCUCgGGGCCCGcGGc -3'
miRNA:   3'- cCCUGAGAuCUGGAGgUCUGGGC-CCu -5'
29137 5' -58.1 NC_006146.1 + 126247 0.67 0.804502
Target:  5'- uGGGAC-CcAGGCgC-CCGGGCuuGGGAg -3'
miRNA:   3'- -CCCUGaGaUCUG-GaGGUCUGggCCCU- -5'
29137 5' -58.1 NC_006146.1 + 130369 0.67 0.795827
Target:  5'- aGGGGCUg-AGAgCUCC---CCCGGGAa -3'
miRNA:   3'- -CCCUGAgaUCUgGAGGucuGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 63218 0.67 0.795827
Target:  5'- gGGGACUgUGuGACUUgUuauGGAUCCGGGGg -3'
miRNA:   3'- -CCCUGAgAU-CUGGAgG---UCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 24225 0.67 0.795827
Target:  5'- uGGGGC-CgGGGCCgcCCAccGCCCGGGAg -3'
miRNA:   3'- -CCCUGaGaUCUGGa-GGUc-UGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 24270 0.67 0.795827
Target:  5'- uGGAC-CcAGGCCUCguGACCCuggccGGGGg -3'
miRNA:   3'- cCCUGaGaUCUGGAGguCUGGG-----CCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.