miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29138 3' -57.8 NC_006146.1 + 83687 0.67 0.844182
Target:  5'- uGGCGUCuUCCAGcAGUCuGUGcuGCuGCa -3'
miRNA:   3'- -CCGCAGcAGGUC-UCAGuCGCucCG-CG- -5'
29138 3' -57.8 NC_006146.1 + 33971 0.67 0.828196
Target:  5'- gGGCGUgGUCCGcuGGGUCcGCuGGuccGGUGCa -3'
miRNA:   3'- -CCGCAgCAGGU--CUCAGuCG-CU---CCGCG- -5'
29138 3' -57.8 NC_006146.1 + 133059 0.67 0.828196
Target:  5'- uGGCGUC-UCCAGGGUgguuccgggUGGgGGGGUGg -3'
miRNA:   3'- -CCGCAGcAGGUCUCA---------GUCgCUCCGCg -5'
29138 3' -57.8 NC_006146.1 + 88525 0.67 0.827379
Target:  5'- uGCGgcuGUCCAGAGUgcCAGCGguguguuAGGgGCu -3'
miRNA:   3'- cCGCag-CAGGUCUCA--GUCGC-------UCCgCG- -5'
29138 3' -57.8 NC_006146.1 + 112564 0.67 0.823267
Target:  5'- cGGgGUCGUgaggaugcagcuggCCAGGGUggaguucuccacccCGGCGAaGCGCa -3'
miRNA:   3'- -CCgCAGCA--------------GGUCUCA--------------GUCGCUcCGCG- -5'
29138 3' -57.8 NC_006146.1 + 113504 0.67 0.819948
Target:  5'- uGCGUCGgCCGGgcacGGUC-GCGGGGCcaGCc -3'
miRNA:   3'- cCGCAGCaGGUC----UCAGuCGCUCCG--CG- -5'
29138 3' -57.8 NC_006146.1 + 48228 0.67 0.81154
Target:  5'- uGGCG-CG-CCuGGGUgAGCGccGCGCg -3'
miRNA:   3'- -CCGCaGCaGGuCUCAgUCGCucCGCG- -5'
29138 3' -57.8 NC_006146.1 + 50011 0.67 0.81154
Target:  5'- aGGCGaucCGguugaugcagCCGGGGUCgaggcgcaggAGgGAGGCGCa -3'
miRNA:   3'- -CCGCa--GCa---------GGUCUCAG----------UCgCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 158894 0.67 0.808987
Target:  5'- cGGUcUCGggcaCCGGAGUCAGCGAgcucuucugccccuGGCa- -3'
miRNA:   3'- -CCGcAGCa---GGUCUCAGUCGCU--------------CCGcg -5'
29138 3' -57.8 NC_006146.1 + 169173 0.68 0.802978
Target:  5'- cGGCGcC-UgCAGGGggggcCGGCGGGGCGUc -3'
miRNA:   3'- -CCGCaGcAgGUCUCa----GUCGCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 168241 0.68 0.802978
Target:  5'- cGGCGcC-UgCAGGGggggcCGGCGGGGCGUc -3'
miRNA:   3'- -CCGCaGcAgGUCUCa----GUCGCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 167309 0.68 0.802978
Target:  5'- cGGCGcC-UgCAGGGggggcCGGCGGGGCGUc -3'
miRNA:   3'- -CCGCaGcAgGUCUCa----GUCGCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 32878 0.68 0.802978
Target:  5'- cGCGagGUCCcugccuggcaccAGGGUcCGGCugGGGGCGCa -3'
miRNA:   3'- cCGCagCAGG------------UCUCA-GUCG--CUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 61316 0.68 0.802978
Target:  5'- cGGCGUCcugCCcGGGUggccuagcCGGCGAGGCa- -3'
miRNA:   3'- -CCGCAGca-GGuCUCA--------GUCGCUCCGcg -5'
29138 3' -57.8 NC_006146.1 + 136708 0.68 0.794271
Target:  5'- cGCGagGUCCcugccuggcccAGGGUcCGGCugGGGGCGCa -3'
miRNA:   3'- cCGCagCAGG-----------UCUCA-GUCG--CUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 43605 0.68 0.788981
Target:  5'- aGGCcggGUCGggUCGGGGgaagagggagugggCGGCGGGGCGUg -3'
miRNA:   3'- -CCG---CAGCa-GGUCUCa-------------GUCGCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 37877 0.68 0.785427
Target:  5'- cGGCGagcaGU--AGAGaCGGCGAGGUGCg -3'
miRNA:   3'- -CCGCag--CAggUCUCaGUCGCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 50725 0.68 0.776453
Target:  5'- cGGCGUUGagCGGGGgCGaCGGGGCGUc -3'
miRNA:   3'- -CCGCAGCagGUCUCaGUcGCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 56225 0.68 0.767357
Target:  5'- cGCGagcCGUCCAGcgGGUCcGCGGGG-GCg -3'
miRNA:   3'- cCGCa--GCAGGUC--UCAGuCGCUCCgCG- -5'
29138 3' -57.8 NC_006146.1 + 125818 0.68 0.765524
Target:  5'- uGGCGUCGUCCucAGAcucgcaguccgaccgGUCAucaagcccaaggcccGCGAGGCc- -3'
miRNA:   3'- -CCGCAGCAGG--UCU---------------CAGU---------------CGCUCCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.