miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29138 5' -51.9 NC_006146.1 + 149175 0.66 0.989004
Target:  5'- gGGUGgCCGcCGAGUUguUGUcaaagagGCACUGCAg -3'
miRNA:   3'- aCCGCaGGU-GCUCAA--ACG-------UGUGAUGU- -5'
29138 5' -51.9 NC_006146.1 + 116818 0.66 0.986046
Target:  5'- gGGCGUCCAgGAcGUgUGCcgggACGCgGCGg -3'
miRNA:   3'- aCCGCAGGUgCU-CAaACG----UGUGaUGU- -5'
29138 5' -51.9 NC_006146.1 + 2381 0.66 0.985702
Target:  5'- aGGCGUCCGCGGGcuuccagaggGCuCugUugGu -3'
miRNA:   3'- aCCGCAGGUGCUCaaa-------CGuGugAugU- -5'
29138 5' -51.9 NC_006146.1 + 149631 0.66 0.984262
Target:  5'- gGGCGUCCGCcagcaccaGGUcgaGCACGCgccgGCAg -3'
miRNA:   3'- aCCGCAGGUGc-------UCAaa-CGUGUGa---UGU- -5'
29138 5' -51.9 NC_006146.1 + 125968 0.67 0.98231
Target:  5'- cUGGCGUCUugcUGGGUccGCACucgcgGCUGCGa -3'
miRNA:   3'- -ACCGCAGGu--GCUCAaaCGUG-----UGAUGU- -5'
29138 5' -51.9 NC_006146.1 + 128119 0.67 0.980182
Target:  5'- aUGGCGUCCAgGAGgc-GCGaGCcACGa -3'
miRNA:   3'- -ACCGCAGGUgCUCaaaCGUgUGaUGU- -5'
29138 5' -51.9 NC_006146.1 + 112719 0.67 0.980182
Target:  5'- gGGCGUCCcUGAGgcccgUGUACAg-GCAg -3'
miRNA:   3'- aCCGCAGGuGCUCaa---ACGUGUgaUGU- -5'
29138 5' -51.9 NC_006146.1 + 114956 0.67 0.980182
Target:  5'- cGGCGaUgGCGGGgg-GCACGCaGCAg -3'
miRNA:   3'- aCCGCaGgUGCUCaaaCGUGUGaUGU- -5'
29138 5' -51.9 NC_006146.1 + 44511 0.67 0.977868
Target:  5'- gGGCGUCCG-GGGUUucagGCugACggGCGg -3'
miRNA:   3'- aCCGCAGGUgCUCAAa---CGugUGa-UGU- -5'
29138 5' -51.9 NC_006146.1 + 104528 0.67 0.97536
Target:  5'- cGGCGUCCuuGAGgccUUGaaaGCcCUGCAc -3'
miRNA:   3'- aCCGCAGGugCUCa--AACg--UGuGAUGU- -5'
29138 5' -51.9 NC_006146.1 + 61944 0.68 0.959663
Target:  5'- gGGCccugGUCCACGGGacggUGCACAUUuuCAg -3'
miRNA:   3'- aCCG----CAGGUGCUCaa--ACGUGUGAu-GU- -5'
29138 5' -51.9 NC_006146.1 + 33797 0.7 0.91648
Target:  5'- aUGG-GUCCGCGGGUUuggUGCAC-CUGgAa -3'
miRNA:   3'- -ACCgCAGGUGCUCAA---ACGUGuGAUgU- -5'
29138 5' -51.9 NC_006146.1 + 100167 0.7 0.910432
Target:  5'- cGGCGUCCGCGAGggggGCAauaaGCc--- -3'
miRNA:   3'- aCCGCAGGUGCUCaaa-CGUg---UGaugu -5'
29138 5' -51.9 NC_006146.1 + 33607 0.7 0.904134
Target:  5'- gGGCGuggUCCGCGGGUUcggUGCAC-CUGgAa -3'
miRNA:   3'- aCCGC---AGGUGCUCAA---ACGUGuGAUgU- -5'
29138 5' -51.9 NC_006146.1 + 123885 0.7 0.89759
Target:  5'- gGGCGcCCGCGAGUccgaccggGC-CGCUGCc -3'
miRNA:   3'- aCCGCaGGUGCUCAaa------CGuGUGAUGu -5'
29138 5' -51.9 NC_006146.1 + 110495 0.7 0.896923
Target:  5'- cGGCcagGUCCAgGAGggUGCagauguucuccagGCGCUGCAc -3'
miRNA:   3'- aCCG---CAGGUgCUCaaACG-------------UGUGAUGU- -5'
29138 5' -51.9 NC_006146.1 + 49942 0.71 0.876514
Target:  5'- cGGaCGUCCGcCGuGUacUUGCGCACgUGCAa -3'
miRNA:   3'- aCC-GCAGGU-GCuCA--AACGUGUG-AUGU- -5'
29138 5' -51.9 NC_006146.1 + 157152 1.09 0.007082
Target:  5'- aUGGCGUCCACGAGUUUGCACACUACAu -3'
miRNA:   3'- -ACCGCAGGUGCUCAAACGUGUGAUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.