miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29139 3' -54.6 NC_006146.1 + 21343 0.66 0.950688
Target:  5'- gUCaUUCUC--GGAgGGGCUgCCGGCg -3'
miRNA:   3'- aAGaAAGAGuaCCUaCUCGGgGGCCG- -5'
29139 3' -54.6 NC_006146.1 + 64913 0.66 0.946382
Target:  5'- ------gUCGUGGAUGGGCUCCagGGUu -3'
miRNA:   3'- aagaaagAGUACCUACUCGGGGg-CCG- -5'
29139 3' -54.6 NC_006146.1 + 155013 0.66 0.932011
Target:  5'- -gCUggCUCGaGGccagcGAGCCCuCCGGCa -3'
miRNA:   3'- aaGAaaGAGUaCCua---CUCGGG-GGCCG- -5'
29139 3' -54.6 NC_006146.1 + 37229 0.67 0.92455
Target:  5'- cUCUUUCUCAUaucccaaaaAGCuCCCCGGCc -3'
miRNA:   3'- aAGAAAGAGUAccuac----UCG-GGGGCCG- -5'
29139 3' -54.6 NC_006146.1 + 82478 0.67 0.921205
Target:  5'- ----cUCUUccGGaAUGAcCCCCCGGCa -3'
miRNA:   3'- aagaaAGAGuaCC-UACUcGGGGGCCG- -5'
29139 3' -54.6 NC_006146.1 + 146593 0.68 0.889926
Target:  5'- gUCgcgCUCuggGUGGAgggGAaacagcguccaGCCCCCGGCc -3'
miRNA:   3'- aAGaaaGAG---UACCUa--CU-----------CGGGGGCCG- -5'
29139 3' -54.6 NC_006146.1 + 67074 0.68 0.882957
Target:  5'- cUC-UUCUCccagguuugGUGGcgGAGCUCuuGGCa -3'
miRNA:   3'- aAGaAAGAG---------UACCuaCUCGGGggCCG- -5'
29139 3' -54.6 NC_006146.1 + 57334 0.68 0.882957
Target:  5'- ----cUCUCugggGGcgGGGCCCCgGGUg -3'
miRNA:   3'- aagaaAGAGua--CCuaCUCGGGGgCCG- -5'
29139 3' -54.6 NC_006146.1 + 65170 0.68 0.882957
Target:  5'- cUCUUggagCUCuUGGGgcucuugGAGCCCuaGGCg -3'
miRNA:   3'- aAGAAa---GAGuACCUa------CUCGGGggCCG- -5'
29139 3' -54.6 NC_006146.1 + 141307 0.68 0.860699
Target:  5'- -----gUUCAgccUGGcUGAGCCCCCGGg -3'
miRNA:   3'- aagaaaGAGU---ACCuACUCGGGGGCCg -5'
29139 3' -54.6 NC_006146.1 + 150273 0.69 0.836533
Target:  5'- cUUCUUUacaaaGUGGuagGuGCCCCCGGUg -3'
miRNA:   3'- -AAGAAAgag--UACCua-CuCGGGGGCCG- -5'
29139 3' -54.6 NC_006146.1 + 157772 0.69 0.819455
Target:  5'- cUCUc-CUCGUGGGcccggGAGCCCCCGu- -3'
miRNA:   3'- aAGAaaGAGUACCUa----CUCGGGGGCcg -5'
29139 3' -54.6 NC_006146.1 + 122765 0.72 0.694621
Target:  5'- aUCUUggggaUC-UGGcgGGGCuCCCCGGCg -3'
miRNA:   3'- aAGAAag---AGuACCuaCUCG-GGGGCCG- -5'
29139 3' -54.6 NC_006146.1 + 145079 0.77 0.407489
Target:  5'- aUCUc-CUCAUgagggugccgagGGAUGGGUCCCCGGCg -3'
miRNA:   3'- aAGAaaGAGUA------------CCUACUCGGGGGCCG- -5'
29139 3' -54.6 NC_006146.1 + 157316 1.08 0.004194
Target:  5'- cUUCUUUCUCAUGGAUGAGCCCCCGGCc -3'
miRNA:   3'- -AAGAAAGAGUACCUACUCGGGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.