miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2914 3' -57.6 NC_001493.1 + 9506 0.66 0.832643
Target:  5'- gGGAGCGGGacgcguccacgCGCUCc-ACGUCUCCGCg -3'
miRNA:   3'- -UCUUGCUCa----------GCGAGucUGCGGGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 128484 0.66 0.824241
Target:  5'- gAGGACGAGgaugagguauUCGCgCGGGCGCuggCCgCCGCc -3'
miRNA:   3'- -UCUUGCUC----------AGCGaGUCUGCG---GG-GGUG- -5'
2914 3' -57.6 NC_001493.1 + 12930 0.66 0.824241
Target:  5'- gAGGACGAGgaugagguauUCGCgCGGGCGCuggCCgCCGCc -3'
miRNA:   3'- -UCUUGCUC----------AGCGaGUCUGCG---GG-GGUG- -5'
2914 3' -57.6 NC_001493.1 + 39483 0.66 0.824241
Target:  5'- uGAuCGAGUCGUccgUGGuCGCCCCCc- -3'
miRNA:   3'- uCUuGCUCAGCGa--GUCuGCGGGGGug -5'
2914 3' -57.6 NC_001493.1 + 96014 0.66 0.80427
Target:  5'- cGAugGAGUgGCUCGucacgagcaaccccGAUGUCUUCACg -3'
miRNA:   3'- uCUugCUCAgCGAGU--------------CUGCGGGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 26790 0.67 0.788975
Target:  5'- cGAGCaccAGUCGCUUGGGgGCCCUCc- -3'
miRNA:   3'- uCUUGc--UCAGCGAGUCUgCGGGGGug -5'
2914 3' -57.6 NC_001493.1 + 30077 0.67 0.788975
Target:  5'- gGGAAUGAgccccucgguGUUGCUCAcGAuCGUCgCCCACg -3'
miRNA:   3'- -UCUUGCU----------CAGCGAGU-CU-GCGG-GGGUG- -5'
2914 3' -57.6 NC_001493.1 + 118753 0.67 0.770463
Target:  5'- cGGACGAgGUCGa--GGAUGCcauCCCCGCg -3'
miRNA:   3'- uCUUGCU-CAGCgagUCUGCG---GGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 3199 0.67 0.770463
Target:  5'- cGGACGAgGUCGa--GGAUGCcauCCCCGCg -3'
miRNA:   3'- uCUUGCU-CAGCgagUCUGCG---GGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 92275 0.67 0.770462
Target:  5'- aAGAucucACGAGagGUgaucaCGGAUGCCCCCGu -3'
miRNA:   3'- -UCU----UGCUCagCGa----GUCUGCGGGGGUg -5'
2914 3' -57.6 NC_001493.1 + 124894 0.67 0.761018
Target:  5'- gAGGACGuGgagCGCgUGGACGCgUCCCGCu -3'
miRNA:   3'- -UCUUGCuCa--GCGaGUCUGCG-GGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 9340 0.67 0.761018
Target:  5'- gAGGACGuGgagCGCgUGGACGCgUCCCGCu -3'
miRNA:   3'- -UCUUGCuCa--GCGaGUCUGCG-GGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 54867 0.67 0.738877
Target:  5'- gGGAGCGAGUgGUgcgagccgccccggUCAG-CGCCCcgCCGCc -3'
miRNA:   3'- -UCUUGCUCAgCG--------------AGUCuGCGGG--GGUG- -5'
2914 3' -57.6 NC_001493.1 + 129860 0.68 0.72219
Target:  5'- cGGGACuGGUgGCggCAGACGCgCUCUACg -3'
miRNA:   3'- -UCUUGcUCAgCGa-GUCUGCG-GGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 14306 0.68 0.72219
Target:  5'- cGGGACuGGUgGCggCAGACGCgCUCUACg -3'
miRNA:   3'- -UCUUGcUCAgCGa-GUCUGCG-GGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 95692 0.68 0.692227
Target:  5'- gGGAGCGGGgauguugcgaUCGUgacucuccgUAGGCGCCCCC-Ca -3'
miRNA:   3'- -UCUUGCUC----------AGCGa--------GUCUGCGGGGGuG- -5'
2914 3' -57.6 NC_001493.1 + 69299 0.69 0.661814
Target:  5'- cGAGCGAGUCcgagGCUgGcGCGCCCgUACa -3'
miRNA:   3'- uCUUGCUCAG----CGAgUcUGCGGGgGUG- -5'
2914 3' -57.6 NC_001493.1 + 131331 0.69 0.641406
Target:  5'- uGGAucACGGGUUGgUagaGGACGUCUCCGCa -3'
miRNA:   3'- -UCU--UGCUCAGCgAg--UCUGCGGGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 15777 0.69 0.641406
Target:  5'- uGGAucACGGGUUGgUagaGGACGUCUCCGCa -3'
miRNA:   3'- -UCU--UGCUCAGCgAg--UCUGCGGGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 19820 0.69 0.641405
Target:  5'- cAGAGCGGGUUGUUCAugguGCGCaaCCACu -3'
miRNA:   3'- -UCUUGCUCAGCGAGUc---UGCGggGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.