miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2914 3' -57.6 NC_001493.1 + 41893 1.09 0.001768
Target:  5'- aAGAACGAGUCGCUCAGACGCCCCCACu -3'
miRNA:   3'- -UCUUGCUCAGCGAGUCUGCGGGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 19793 0.75 0.350944
Target:  5'- cAGAACGGGUauggcgaCGCUCaAGACGgCCCCGg -3'
miRNA:   3'- -UCUUGCUCA-------GCGAG-UCUGCgGGGGUg -5'
2914 3' -57.6 NC_001493.1 + 9283 0.74 0.367581
Target:  5'- gGGAGCGcGGUCGCggGGAUGaCCCCGCg -3'
miRNA:   3'- -UCUUGC-UCAGCGagUCUGCgGGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 124837 0.74 0.367581
Target:  5'- gGGAGCGcGGUCGCggGGAUGaCCCCGCg -3'
miRNA:   3'- -UCUUGC-UCAGCGagUCUGCgGGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 129282 0.72 0.453895
Target:  5'- cGGGACGGGUCGguCUCGGGCcUCUCCACc -3'
miRNA:   3'- -UCUUGCUCAGC--GAGUCUGcGGGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 13728 0.72 0.453895
Target:  5'- cGGGACGGGUCGguCUCGGGCcUCUCCACc -3'
miRNA:   3'- -UCUUGCUCAGC--GAGUCUGcGGGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 81180 0.71 0.530229
Target:  5'- uGAACGGGUCGCUCcuGGGCccGUCCUCGu -3'
miRNA:   3'- uCUUGCUCAGCGAG--UCUG--CGGGGGUg -5'
2914 3' -57.6 NC_001493.1 + 105264 0.7 0.570147
Target:  5'- gGGAACGAGUCuuUCcaGCGCCCUCGg -3'
miRNA:   3'- -UCUUGCUCAGcgAGucUGCGGGGGUg -5'
2914 3' -57.6 NC_001493.1 + 33525 0.7 0.570147
Target:  5'- cGggUGGGUCauccagagGCUCGcGACGCCCCUg- -3'
miRNA:   3'- uCuuGCUCAG--------CGAGU-CUGCGGGGGug -5'
2914 3' -57.6 NC_001493.1 + 14132 0.7 0.58025
Target:  5'- cGAugGGGguggCGCUCucgaagGGACGCgCCCCGg -3'
miRNA:   3'- uCUugCUCa---GCGAG------UCUGCG-GGGGUg -5'
2914 3' -57.6 NC_001493.1 + 129687 0.7 0.58025
Target:  5'- cGAugGGGguggCGCUCucgaagGGACGCgCCCCGg -3'
miRNA:   3'- uCUugCUCa---GCGAG------UCUGCG-GGGGUg -5'
2914 3' -57.6 NC_001493.1 + 60271 0.7 0.590391
Target:  5'- uGGAAUGGGUaCGCgUCAGAcuggggauCGCgCCCGCg -3'
miRNA:   3'- -UCUUGCUCA-GCG-AGUCU--------GCGgGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 64384 0.7 0.590392
Target:  5'- -cAACG-GUgGCUCGGAUGaggaCCCCACg -3'
miRNA:   3'- ucUUGCuCAgCGAGUCUGCg---GGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 119136 0.69 0.625054
Target:  5'- cGGAGCGAGucaUCGCUaCacgccgauggggaaaAGAcccgcCGCCCCCGCg -3'
miRNA:   3'- -UCUUGCUC---AGCGA-G---------------UCU-----GCGGGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 3582 0.69 0.625054
Target:  5'- cGGAGCGAGucaUCGCUaCacgccgauggggaaaAGAcccgcCGCCCCCGCg -3'
miRNA:   3'- -UCUUGCUC---AGCGA-G---------------UCU-----GCGGGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 101911 0.69 0.631186
Target:  5'- gGGGACaauGUCGCUCGGAC-CUCCgGCu -3'
miRNA:   3'- -UCUUGcu-CAGCGAGUCUGcGGGGgUG- -5'
2914 3' -57.6 NC_001493.1 + 19820 0.69 0.641405
Target:  5'- cAGAGCGGGUUGUUCAugguGCGCaaCCACu -3'
miRNA:   3'- -UCUUGCUCAGCGAGUc---UGCGggGGUG- -5'
2914 3' -57.6 NC_001493.1 + 131331 0.69 0.641406
Target:  5'- uGGAucACGGGUUGgUagaGGACGUCUCCGCa -3'
miRNA:   3'- -UCU--UGCUCAGCgAg--UCUGCGGGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 15777 0.69 0.641406
Target:  5'- uGGAucACGGGUUGgUagaGGACGUCUCCGCa -3'
miRNA:   3'- -UCU--UGCUCAGCgAg--UCUGCGGGGGUG- -5'
2914 3' -57.6 NC_001493.1 + 69299 0.69 0.661814
Target:  5'- cGAGCGAGUCcgagGCUgGcGCGCCCgUACa -3'
miRNA:   3'- uCUUGCUCAG----CGAgUcUGCGGGgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.