miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2914 5' -58.5 NC_001493.1 + 82013 0.66 0.821347
Target:  5'- cCCGaaugGAGACCgagugcgaaaGGGUGugcAGaGACCCGGg- -3'
miRNA:   3'- -GGCa---CUCUGG----------UCCAC---UC-CUGGGCCag -5'
2914 5' -58.5 NC_001493.1 + 5633 0.66 0.812876
Target:  5'- aCCGgggagGAGACCAGGgagGAGGGaa-GGg- -3'
miRNA:   3'- -GGCa----CUCUGGUCCa--CUCCUgggCCag -5'
2914 5' -58.5 NC_001493.1 + 100660 0.66 0.812876
Target:  5'- uCgGUGAGAUCAGGgucgugaucGAGGccauaaaaucACCCGGg- -3'
miRNA:   3'- -GgCACUCUGGUCCa--------CUCC----------UGGGCCag -5'
2914 5' -58.5 NC_001493.1 + 121188 0.66 0.812876
Target:  5'- aCCGgggagGAGACCAGGgagGAGGGaa-GGg- -3'
miRNA:   3'- -GGCa----CUCUGGUCCa--CUCCUgggCCag -5'
2914 5' -58.5 NC_001493.1 + 87795 0.66 0.78655
Target:  5'- cCCG-GGGGgCAGGUcccGGGGuagAUCCGGUCc -3'
miRNA:   3'- -GGCaCUCUgGUCCA---CUCC---UGGGCCAG- -5'
2914 5' -58.5 NC_001493.1 + 30932 0.67 0.759025
Target:  5'- cCCgGUGcGGCCGcGGUGAcGGCgCGGUCg -3'
miRNA:   3'- -GG-CACuCUGGU-CCACUcCUGgGCCAG- -5'
2914 5' -58.5 NC_001493.1 + 120850 0.67 0.759025
Target:  5'- uCUGUGAGAUCcaguGGGaUGAGGACgUGG-Cg -3'
miRNA:   3'- -GGCACUCUGG----UCC-ACUCCUGgGCCaG- -5'
2914 5' -58.5 NC_001493.1 + 5296 0.67 0.759025
Target:  5'- uCUGUGAGAUCcaguGGGaUGAGGACgUGG-Cg -3'
miRNA:   3'- -GGCACUCUGG----UCC-ACUCCUGgGCCaG- -5'
2914 5' -58.5 NC_001493.1 + 106714 0.67 0.759025
Target:  5'- uCUGUGAcg-CGGG-GGGGACCCGGg- -3'
miRNA:   3'- -GGCACUcugGUCCaCUCCUGGGCCag -5'
2914 5' -58.5 NC_001493.1 + 111045 0.68 0.724734
Target:  5'- aCCGaaguUGAuGACCAccgucucgccuccccGGUGAGGGCCaucgagccgauCGGUCg -3'
miRNA:   3'- -GGC----ACU-CUGGU---------------CCACUCCUGG-----------GCCAG- -5'
2914 5' -58.5 NC_001493.1 + 58589 0.68 0.701297
Target:  5'- uCCGgGAGA--GGGUGAGGACaUgGGUCu -3'
miRNA:   3'- -GGCaCUCUggUCCACUCCUG-GgCCAG- -5'
2914 5' -58.5 NC_001493.1 + 93506 0.68 0.691429
Target:  5'- gCCGUGAGcucCCGGGUcgauacGAGcGCaCCGGUCc -3'
miRNA:   3'- -GGCACUCu--GGUCCA------CUCcUG-GGCCAG- -5'
2914 5' -58.5 NC_001493.1 + 103200 0.68 0.691429
Target:  5'- uCCGUcGGGACC-GGUucGGACCCauucgGGUCc -3'
miRNA:   3'- -GGCA-CUCUGGuCCAcuCCUGGG-----CCAG- -5'
2914 5' -58.5 NC_001493.1 + 37946 0.68 0.69044
Target:  5'- aCCGUgaagaucGAGACuCGGGaGAGGAUCUGGg- -3'
miRNA:   3'- -GGCA-------CUCUG-GUCCaCUCCUGGGCCag -5'
2914 5' -58.5 NC_001493.1 + 30455 0.68 0.684494
Target:  5'- aUCGUGucgcgggaucagauGAUCAGGUGAGGuCCCucauugacucgcuGGUCa -3'
miRNA:   3'- -GGCACu-------------CUGGUCCACUCCuGGG-------------CCAG- -5'
2914 5' -58.5 NC_001493.1 + 63493 0.69 0.631518
Target:  5'- cCCGUGGGcaucGCCGGuGUGGuggucaccacGGugUCGGUCg -3'
miRNA:   3'- -GGCACUC----UGGUC-CACU----------CCugGGCCAG- -5'
2914 5' -58.5 NC_001493.1 + 63244 0.69 0.631518
Target:  5'- cCCGUGGGcaucGCCGGuGUGGuggucaccacGGugUCGGUCg -3'
miRNA:   3'- -GGCACUC----UGGUC-CACU----------CCugGGCCAG- -5'
2914 5' -58.5 NC_001493.1 + 63199 0.69 0.631518
Target:  5'- cCCGUGGGcaucGCCGGuGUGGuggucaccacGGugUCGGUCg -3'
miRNA:   3'- -GGCACUC----UGGUC-CACU----------CCugGGCCAG- -5'
2914 5' -58.5 NC_001493.1 + 121062 0.69 0.631518
Target:  5'- aCCG-GuGACCAGGgaGAGuuUCCGGUCa -3'
miRNA:   3'- -GGCaCuCUGGUCCa-CUCcuGGGCCAG- -5'
2914 5' -58.5 NC_001493.1 + 56105 0.69 0.631518
Target:  5'- aUGUGAGACCGGG-GuGGuCUCGGa- -3'
miRNA:   3'- gGCACUCUGGUCCaCuCCuGGGCCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.