miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29141 5' -56.7 NC_006146.1 + 44492 0.67 0.861531
Target:  5'- gUGCCGUGcUCGCGaCCCcGGGCGUCc -3'
miRNA:   3'- gGCGGCGCaGGUGCaGGGaCUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 18489 0.68 0.81357
Target:  5'- cCCGCCucaGUCCccuCGcCCCUGGGCcUCa -3'
miRNA:   3'- -GGCGGcg-CAGGu--GCaGGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 137196 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 54465 0.68 0.846267
Target:  5'- gCGaaCCGCGUCCAUGaUCCUcagGAugGCGUCg -3'
miRNA:   3'- gGC--GGCGCAGGUGC-AGGGa--CU--UGUAG- -5'
29141 5' -56.7 NC_006146.1 + 137103 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 85520 0.66 0.919926
Target:  5'- aCGCCG-GUCCcggcuucugGCGUCUCcaccGGGCAUCu -3'
miRNA:   3'- gGCGGCgCAGG---------UGCAGGGa---CUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 137382 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 167231 0.72 0.631998
Target:  5'- cCCGucugcucCCGCGgCCA-GUCCCUGGAUGUCg -3'
miRNA:   3'- -GGC-------GGCGCaGGUgCAGGGACUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 98723 0.74 0.496028
Target:  5'- gCCGCCGCGUCCuCGUcgaCCC---GCAUCu -3'
miRNA:   3'- -GGCGGCGCAGGuGCA---GGGacuUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 165275 0.75 0.450195
Target:  5'- cCCGCCaUGgCCAUGUCCCUGGugAUUa -3'
miRNA:   3'- -GGCGGcGCaGGUGCAGGGACUugUAG- -5'
29141 5' -56.7 NC_006146.1 + 151471 0.76 0.398427
Target:  5'- gCGCCGCGUCCACGUUggCUUcGAAgAUCu -3'
miRNA:   3'- gGCGGCGCAGGUGCAG--GGA-CUUgUAG- -5'
29141 5' -56.7 NC_006146.1 + 54076 0.78 0.328313
Target:  5'- gCCGCCGCGUCCcggcacACGUCC-UGGACGc- -3'
miRNA:   3'- -GGCGGCGCAGG------UGCAGGgACUUGUag -5'
29141 5' -56.7 NC_006146.1 + 158507 1.11 0.002277
Target:  5'- aCCGCCGCGUCCACGUCCCUGAACAUCu -3'
miRNA:   3'- -GGCGGCGCAGGUGCAGGGACUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 52645 0.68 0.845484
Target:  5'- gCCGCUcuggcgcaugaggGCGUCCAgccucgcccccuCGUCCa-GGACAUCg -3'
miRNA:   3'- -GGCGG-------------CGCAGGU------------GCAGGgaCUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 50539 0.68 0.821999
Target:  5'- -aGCCGC-UCCAgGUCCCgggUGGGCAc- -3'
miRNA:   3'- ggCGGCGcAGGUgCAGGG---ACUUGUag -5'
29141 5' -56.7 NC_006146.1 + 27723 0.68 0.81357
Target:  5'- cCCGCCucaGUCCccuCGcCCCUGGGCcUCa -3'
miRNA:   3'- -GGCGGcg-CAGGu--GCaGGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 24645 0.68 0.81357
Target:  5'- cCCGCCucaGUCCccuCGcCCCUGGGCcUCa -3'
miRNA:   3'- -GGCGGcg-CAGGu--GCaGGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 15411 0.68 0.81357
Target:  5'- cCCGCCucaGUCCccuCGcCCCUGGGCcUCa -3'
miRNA:   3'- -GGCGGcg-CAGGu--GCaGGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 12332 0.68 0.81357
Target:  5'- cCCGCCucaGUCCccuCGcCCCUGGGCcUCa -3'
miRNA:   3'- -GGCGGcg-CAGGu--GCaGGGACUUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 137475 0.68 0.81357
Target:  5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3'
miRNA:   3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.